BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47420.1
Length=1109
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473889 jgi|Araly1|473889|fgenesh2_kg.1__3843__AT1G47420.1 1380 0.0
Ahg923010 jgi|Araly1|923010|scaffold_104291.1 198 6e-50
> Ahg473889 jgi|Araly1|473889|fgenesh2_kg.1__3843__AT1G47420.1
Length=1050
Score = 1380 bits (747), Expect = 0.0
Identities = 958/1057 (91%), Gaps = 26/1057 (2%)
Strand=Plus/Plus
Query 72 TCAGAAAAATGGGAACCCTAGGACGAGCGATTCACACTGTGGGTAATCGGATTCGTGGAA 131
||| ||||||||||||||||||||||||||||||| || | ||||| |||||||||| ||
Sbjct 1 TCACAAAAATGGGAACCCTAGGACGAGCGATTCACTCTCTCGGTAACCGGATTCGTGCAA 60
Query 132 CTGCCCAAGCCCAAGCTCGCGTTGGTTCTCTTCTTCAAGGAAGCCACCACATCGAGAAAC 191
|||||||| | | | |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 CTGCCCAATCTCTTGATCGCGTTGGTTCTCTTCTTCAAGGAAGCCACCACATCGAGGAAC 120
Query 192 ATCTGTCGAGGCATCGGACGTTGATTACTGTGGCTCCGAACGCTTC--T-GTGA-T-TG- 245
||||||||||||||||| ||||||| ||||||| | || || | | |||| | |
Sbjct 121 ATCTGTCGAGGCATCGGTCGTTGATGACTGTGGTTGATAAATCTCCATTGGTGACTCCGA 180
Query 246 GTG---ATGTTCA-GATCAATAAAGGCTCGTTC-ATTTCGTATGCAAGTGTTTC-TCGTG 299
||| |||| | |||| ||||||||| | |||||||||| | ||| || ||| |
Sbjct 181 GTGCTTCTGTT-ACGATCGGGAAAGGCTCG-GCAATTTCGTATGGATGTG-CTCGTCGAG 237
Query 300 ATTTGCAGTATCCTCGTGCAATGGGAATGGGACAGGTCCGGAGATTTAGCGAAGATGTTT 359
||||||||||| |||||||||| || | ||||| || ||| ||||||||||||||||||
Sbjct 238 ATTTGCAGTATTCTCGTGCAATTGGTGTTGGACAAGTGCGGCGATTTAGCGAAGATGTTT 297
Query 360 CTCACATGCCTGAAATGGAA-GACTCTGATGTTCTGAATGCATTCAAAGACTTGATGGCT 418
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 298 CTCACATGCCTGAAAT-GAAGGACTCTGATGTTCTGAATGCATTCAAAGACTTGATGGCT 356
Query 419 GCAGATTGGGCTGAGCTTCCTTCTGCTGTTGTT-AAAGATGCTAAAACCGCGATATCGAA 477
||||||||||||||||||||||||||||||||| | |||| || | ||||||||||||
Sbjct 357 GCAGATTGGGCTGAGCTTCCTTCTGCTGTTGTTCGCA-ATGCCAAGAGCGCGATATCGAA 415
Query 478 AAACACAGATGACAAGGCAGGGCAAGAGGCTTTGAAAAATGTGTTCCGAGCAGCTGAAGC 537
|||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 416 AAACACAGATGACAAGGCGGGGCAAGAGGCCTTGAAAAACGTGTTCCGAGCAGCTGAAGC 475
Query 538 TGTAGAGGAATTTGGTGGGATTCTCACTTCGATTAAGATGGAAATCGATGATAGCATTGG 597
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 476 TGTTGAGGAATTTGGTGGGATTCTTACTTCGATTAAGATGGAAATCGATGATAGCATTGG 535
Query 598 AATGAGTGGGGAGGGTGTGAAGCCTTTACCAAATGATATAACCGATGCGCTGCGTACTGC 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AATGAGTGGGGAGGGTGTGAAGCCTTTACCAAATGATATAACCGATGCGCTGCGTACTGC 595
Query 658 TTATCAGAGGTATGCTGAGTATCTAGACTCCTTTGAACCTGAAGAAGTCTACTTGAAGAA 717
|||||||||||||||||| || ||||| |||||||||||||||||||| |||||||||||
Sbjct 596 TTATCAGAGGTATGCTGACTACCTAGATTCCTTTGAACCTGAAGAAGTTTACTTGAAGAA 655
Query 718 GAAGGTTGAGATGGAGTTGGGGACTAAGATGATCCACTTGAAGATGAGATGCAGCGGGCT 777
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 656 GAAGGTTGAGATGGAGTTGGGGACAAAGATGATCCACTTGAAGATGAGATGCAGCGGGCT 715
Query 778 TGGTTCTGAATGGGGAAAGGTTACTGTTCTTGGAACCTCAGGACTCTCGGGATCTTACGT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TGGTTCTGAATGGGGAAAGGTTACTGTTCTTGGAACCTCAGGACTCTCGGGATCTTACGT 775
Query 838 GGAGCAAAGGGCCTAAAACAAAAAGAGAAGATCT-AGAATTACGTGCGAAGCTTGTTATG 896
|||||| ||||| |||||| ||||||||||||| | || |||||| || |||||||||
Sbjct 776 GGAGCAGAGGGCATAAAACGGAAAGAGAAGATCTTA-AAG-ACGTGCAAAACTTGTTATG 833
Query 897 TTGTTATTGCGTTATTTTGTCTTAGCACATAATAAAGGTCAATCTGACCAAAAGACAT-A 955
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 834 TTGTTATTGCGTTATTGTGTCTTAACACATAATAAAGGTCAATCTGACCAAAAGACATTA 893
Query 956 TCAGGTGAGTCTGTTCATTGTTTCCTCCAAATGAAGCTTTAAAATTTAGAGCTTAACACC 1015
| |||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 894 TAAGGTGAGTTTGTTCATTGTTTCCTCCAAACGAAGCTTTCAAATTTAGAGCTTAACACC 953
Query 1016 AATTGAAAAATAAACTCACA--TG-AATTTGTGTTCATTTGTTACTGTTTCCTTTTATGA 1072
| |||||||||||||||||| | ||||||||||||||||||||||||||||| ||||
Sbjct 954 AGTTGAAAAATAAACTCACAGCTCCAATTTGTGTTCATTTGTTACTGTTTCCTTACATGA 1013
Query 1073 GAGATCTTTTGTTTATAATGATTCAATATTTTGAGCT 1109
|||||||||||||| ||||||||||| ||||||||||
Sbjct 1014 GAGATCTTTTGTTTCTAATGATTCAACATTTTGAGCT 1050
> Ahg923010 jgi|Araly1|923010|scaffold_104291.1
Length=811
Score = 198 bits (107), Expect = 6e-50
Identities = 145/163 (89%), Gaps = 3/163 (2%)
Strand=Plus/Plus
Query 62 ATCGGAAAAATCAGAAAAATGGGAACCCTAGGACGAGCGATTCACACTGTGGGTAATC-G 120
||||| | ||||| ||||||||||||||||||| |||| ||| ||||||||||||| | |
Sbjct 4 ATCGG-AGAATCACAAAAATGGGAACCCTAGGAAGAGCAATTTACACTGTGGGTAA-CTG 61
Query 121 GATTCGTGGAACTGCCCAAGCCCAAGCTCGCGTTGGTTCTCTTCTTCAAGGAAGCCACCA 180
|||||||||||||| ||||| | | ||||||||||||||||||||||||||||||||
Sbjct 62 GATTCGTGGAACTGGTCAAGCTCTTGATCGCGTTGGTTCTCTTCTTCAAGGAAGCCACCG 121
Query 181 CATCGAGAAACATCTGTCGAGGCATCGGACGTTGATTACTGTG 223
||||||| |||||||||||||||||||||||||||| | ||||
Sbjct 122 CATCGAGGAACATCTGTCGAGGCATCGGACGTTGATGAATGTG 164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41325242028
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5