BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47470.1
Length=522
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928921 jgi|Araly1|928921|scaffold_301378.1 599 7e-171
Ahg913770 jgi|Araly1|913770|Al_scaffold_0001_4024 388 2e-107
Ahg497061 jgi|Araly1|497061|fgenesh2_kg.9__26__AT4G13261.1 350 8e-96
> Ahg928921 jgi|Araly1|928921|scaffold_301378.1
Length=562
Score = 599 bits (324), Expect = 7e-171
Identities = 425/474 (90%), Gaps = 6/474 (1%)
Strand=Plus/Plus
Query 52 ATGGCTCGTCCAATTTTCTCCCAAGAAATTGATCCATATTCACAGGAGGTGCCAAAAGAT 111
|||| | |||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 70 ATGGTTTGTCCAATTTTCTCCCAGGAAATTGATCCATATTCACAGGAGGTGCCAGAAGAT 129
Query 112 GTGGCCATATCTCCATCTTCAAAGTTT-GATATTTACGTCGAAGCTCCTGGTGAAGCTCC 170
||||||||||||||| ||||| | ||| ||||||||||| ||| | || | |||||||||
Sbjct 130 GTGGCCATATCTCCAACTTCAGA-TTTCGATATTTACGTTGAATCCCCCGATGAAGCTCC 188
Query 171 ATTCGAAGAAGCTGATTCACCCGCAATGGAATATGATAGGGAGCTTGCTCACCATTACTC 230
|||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 189 ATTCGAAGAAGCTGGTTCACCCGCAATGGAATATGACATGGAGCTTGCTCACCATTACTC 248
Query 231 GCATAAACAGCTCGATTTTCTTGAGGCTTGCTCTGAAAAGCCAAGC-TCAAAATGCGGAA 289
||| ||||||||||||||||| |||||||| |||||||||| ||| | ||||||||||
Sbjct 249 GCACAAACAGCTCGATTTTCTCCAGGCTTGCGCTGAAAAGCCGAGCGT-AAAATGCGGAG 307
Query 290 ATGAGGTTTTCAAGAACATGTTAGATGAGAC-AGTGCCAATTACAGATGAATGTTGTCGT 348
|||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||
Sbjct 308 ATGAGGTTTTCAAGAACATGTTGGATGAGACTA-CGCCAATTACAGATGAATGTTGTCGT 366
Query 349 GATATATTGAAGATCGGAAAAGATTGCCATCTCGGATTGGTTAAACTCATATTCGCCACA 408
|||||||||||||| || |||||||| |||||||||||||||||| |||||||||||||
Sbjct 367 GATATATTGAAGATGGGCAAAGATTGTCATCTCGGATTGGTTAAAATCATATTCGCCACG 426
Query 409 TATGAGTATAAAAATAAAGCATCTAAAGGCATTCCAAAGAGCAAACAAACATGGAACGAA 468
||||| ||||| |||| |||||||| || |||||||| || |||||||||||||| ||
Sbjct 427 TATGAATATAAGAATATTGCATCTAAGGGTATTCCAAATAGTAAACAAACATGGAATGAT 486
Query 469 TGTGTCTTTAGAGTAGGGAGCAAGATTGGTGCTCCGGTCTCTTTTGAACAGTAA 522
|||||| |||||| ||||||||||||||||||||||| ||||| || ||||||
Sbjct 487 TGTGTCCGTAGAGTTGGGAGCAAGATTGGTGCTCCGGTTTCTTTGGAGCAGTAA 540
> Ahg913770 jgi|Araly1|913770|Al_scaffold_0001_4024
Length=405
Score = 388 bits (210), Expect = 2e-107
Identities = 298/340 (88%), Gaps = 8/340 (2%)
Strand=Plus/Plus
Query 187 TCACCCGCAATGGAATATGATAGGGAGCTTGCTCACCATTACTCGCATAAACAGCTCGAT 246
||||||||||| |||||||| | |||| || ||||||||||||| || ||||||||||||
Sbjct 70 TCACCCGCAATAGAATATGACATGGAGATTTCTCACCATTACTCACACAAACAGCTCGAT 129
Query 247 TTTCTTGAGGCTTGCTCTGAAAAGCCAAGCTCAAAATGCGGAAATGAGGTTTTCAAGAAC 306
|| |||||||||||| |||| ||||| ||| |||||||||||||||||||||||||||||
Sbjct 130 TTCCTTGAGGCTTGCGCTGACAAGCCGAGCACAAAATGCGGAAATGAGGTTTTCAAGAAC 189
Query 307 ATGTTAGATGAGAC-AGTGCCAATTACAGATGAATGTTGTCGTGATATATTGAAGATCGG 365
||||| |||||||| | |||||||||||||| |||||||||||||||||||||||| ||
Sbjct 190 ATGTTGGATGAGACGAC-GCCAATTACAGATGCATGTTGTCGTGATATATTGAAGATGGG 248
Query 366 AAAAGATTGCCATCTCGGATTGGTT-AAACTCATATTCGCCACATATGAGTATAAAAATA 424
||||||||||||||| ||||||||| ||| ||||||||||||| ||||||| ||| |||
Sbjct 249 AAAAGATTGCCATCTTGGATTGGTTCAAA-TCATATTCGCCACGTATGAGTTTAAGAATT 307
Query 425 AAGCATCTAAAGGCATTCC-AAAGAGCAAACAAACATGGAACGAATGTGTCTTTAGAGTA 483
||||||| || ||||| ||| || |||||||||||||| || |||||| ||||||
Sbjct 308 TTTCATCTAAGGGTATTCCGAAA-AGTAAACAAACATGGAATGATTGTGTCCGTAGAGTT 366
Query 484 GGGAGCAAGATTGGTGCTCCGG-TCTCTTTTGAACAGTAA 522
|||| ||||||||||||||||| | |||||||| ||||||
Sbjct 367 GGGAACAAGATTGGTGCTCCGGAT-TCTTTTGAGCAGTAA 405
> Ahg497061 jgi|Araly1|497061|fgenesh2_kg.9__26__AT4G13261.1
Length=396
Score = 350 bits (189), Expect = 8e-96
Identities = 300/352 (85%), Gaps = 13/352 (4%)
Strand=Plus/Plus
Query 167 CTCCATTCGAAGAAGCTGATTCACCCGCAATGGAATATGATAGGGAGCTTGCTCACCATT 226
||||||||||||||||| |||||||||||||||||||||| | | ||||| | | |||||
Sbjct 56 CTCCATTCGAAGAAGCTAATTCACCCGCAATGGAATATGACATGAAGCTT-C-C-CCATT 112
Query 227 ACTCGCATAAACAGCTCGATTTTCTTGAGGCTTGCTCTGAAAAGCCAAGCTCAAAATGCG 286
||||||| ||| || | ||||||||| |||||||| |||||||||| ||||| | |||||
Sbjct 113 ACTCGCAAAAAGAGATTGATTTTCTTAAGGCTTGCGCTGAAAAGCCGAGCTCCATATGCG 172
Query 287 GAAATGAGGTTTTCAAGAACATGTTAGATGAGACAGTGCC-AATTACAGATGAATGTTGT 345
|| |||| ||||| ||||| |||| ||||||| | || | | |||||||||||||||
Sbjct 173 GAGGTGAGATTTTCCAGAACGTGTTGGATGAGA-AAAACCTAGTGACAGATGAATGTTGT 231
Query 346 CGTGATATATTGAAGATCGGAAAAGATTGCCATCTCGGATTGGTTAAACTCATATTCGCC 405
||||||||||||||||| || ||||||||||||||||||||| ||||| |||||||| |
Sbjct 232 CGTGATATATTGAAGATTGGCAAAGATTGCCATCTCGGATTGATTAAAATCATATTCTCG 291
Query 406 ACATATGAGTATAAAAATAAAGCATCTAAAGGCATTCCAAAGA-GCAAACAAACATGGAA 464
| |||||||||||||||| ||||||| |||||| || ||||||||||||||||
Sbjct 292 TCGTATGAGTATAAAAATATTGCATCTA------TTCCAA-GAAGCAAACAAACATGGAA 344
Query 465 CGAATGTGTCTTTAGAGTAGGGAGCAAGATTGGTGCTCCGGTCTCTTTTGAA 516
||| |||||| |||||| |||||||||||||| ||||||||||||||||||
Sbjct 345 CGATTGTGTCCGTAGAGTTGGGAGCAAGATTGGAGCTCCGGTCTCTTTTGAA 396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19001483322
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5