BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47480.1
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473890 jgi|Araly1|473890|fgenesh2_kg.1__3844__AT1G47480.1 1594 0.0
> Ahg473890 jgi|Araly1|473890|fgenesh2_kg.1__3844__AT1G47480.1
Length=1080
Score = 1594 bits (863), Expect = 0.0
Identities = 1014/1085 (93%), Gaps = 18/1085 (2%)
Strand=Plus/Plus
Query 6 AAACATATA-CATCAAAGCTTGACTCTCTTTTTCTCTCCCATGGAATCAACA-AAGAAGC 63
||||||| | |||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1 AAACATA-AGCATCAAAGCTTGACTCTCTTTTTCTCTCCCATGGAATCAA-AGAAGAAGC 58
Query 64 AAGTCTCGTTGGAGCTACTTCCATGGTTAGTTGTCCACACCGATGGAACGGTAGAGAGAC 123
||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 59 AAGTCTCGTTGGAATTACTTCCATGGTTAGTTGTTCACACCGATGGAACAATAGAGAGAC 118
Query 124 TAGCGGGAACCGAGGTTTGTCCTCCCGGTTTGGATCCA-ATAACCGGGGTTTTCTCTAAA 182
||||||||||||| ||||||||||||||||| |||||| | |||||||||||||||||||
Sbjct 119 TAGCGGGAACCGAAGTTTGTCCTCCCGGTTTAGATCCAGA-AACCGGGGTTTTCTCTAAA 177
Query 183 GATATCATTATCGAACCGAAAACCGGTTTATCTGCCCGAATCTATCGACCCTTCTCGATT 242
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GATATCATCATCGAACCGAAAACCGGTTTATCTGCCCGAATCTATCGACCCTTCTCGATT 237
Query 243 CAACCCGGTCAGAAGA-TTCCTCTCATGCTCTATTTTCATGGCGGTGCATTTCTCATCTC 301
||| ||| |||||| | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 238 CAAACCGATCAGAA-ACTTCCTCTCGTGCTCTATTTTCATGGCGGTGCATTTCTCATCTC 296
Query 302 CTCCACTTCCTTCCCCTCTTACCACACCAGTCTTAACAAAATTGTCAATCAGGCTAACGT 361
|||| ||||||| || | |||||||||||||||||||||| |||||||||||||||||||
Sbjct 297 CTCCGCTTCCTTTCCTTGTTACCACACCAGTCTTAACAAATTTGTCAATCAGGCTAACGT 356
Query 362 CATAGCCGTCTCTGTCAATTACAGACTAGCACCAGAACATCCACTTCCTACAGCGTACGA 421
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 357 CATCGCCGTCTCTGTCAATTACAGACTAGCACCAGAACATCCACTTCCTACCGCGTACGA 416
Query 422 AGACTCATGGACTGCGCTAAAGAATATCCAAGCCATAAACGAGCCGTGGATCAACGACTA 481
|||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 417 AGACTCATGGACCGCGATAAAGACTATCCAAGCCATAAACGAGCCGTGGATCAACGACTA 476
Query 482 CGCCGACTTGGACAGTTTATTCCTAGTGGGAGATAGCGCGGGAGCTAATATCTCGCACCA 541
||||||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 477 CGCCGACTTGGACCGTTTATTCCTAGTGGGAGATAGCGCAGGAGCTAACATCTCACACCA 536
Query 542 CCTCGCATTTCGAGCCAAACAATCTGACCAAACCTTGAAAATCAAAGGCATTGGAATGAT 601
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 537 CCTCGCATTTCGAGCCAAACAATCTGACCAAACCGTGAAAATCAAAGGCATTGGAATGAT 596
Query 602 CCACCCATATTTTTGGGGGACACAACCTATCGGAGCAGAGATCAAAGACGAAGCGAGGAA 661
|||||||||||||||||| ||||||||||| ||| ||||| ||||||| |||||||||||
Sbjct 597 CCACCCATATTTTTGGGGAACACAACCTATTGGATCAGAGGTCAAAGATGAAGCGAGGAA 656
Query 662 ACAAATGGTGGACGGATGGTGGGAATTCGTGTGCCCATCCGAGAAAGGATCCGATGACCC 721
| ||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 657 AAAAATGGTTGACGGATGGTGGGAATTCGTGTGCCCGTCTGAGAAAGGATCCGATGACCC 716
Query 722 GTGGATTAATCCGTTTGCGGACGGGTCACCGGATCTTGGAGGGTTAGGGTGTGAGAGAGT 781
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
Sbjct 717 GTGGATTAATCCGTTTGCGGATGGGTCACCGGATCTTGAAGGGTTAGGGTGTGAGAGACT 776
Query 782 GATGATTACTGTGGCGGAGAAAGATATATTGAATGAGAGAGGGAAGATGTATTACGAAAG 841
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 777 GATGATTACTGTGGCGGAGAAAGATATATTGAATGAGAGAGGGAAAATGTATTATGAAAG 836
Query 842 ATTGGTGAAGAGTGAGTGGAAAGGAAAGGTTGAGATTATGGAGACGAAAGAGAAAGATCA 901
||||||||||||| |||||| |||||| ||||||||||||||||| ||||||| ||||||
Sbjct 837 ATTGGTGAAGAGTAAGTGGAGAGGAAAAGTTGAGATTATGGAGACAAAAGAGAGAGATCA 896
Query 902 TGTTTTTCATATTTTCGAGCCAGATTGTGATGAAGCTATGGAGATGGTACGATGCTTGGC 961
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 897 TGTTTTTCATATTTTCGAGCCCGATTGTGATGAAGCTATGGAGATGGTACGACGCTTGGC 956
Query 962 TCTCTTTATAAACCAAGTTGAAGCTTGATatta-ttt-g--tt--tt--gccaaaatttg 1013
||||||||||||| |||| |||||||||||||| ||| | || || ||||||||||
Sbjct 957 TCTCTTTATAAACGAAGTGGAAGCTTGATATTAGTTTCGGATTCGTTTTGCCAAAATTTA 1016
Query 1014 atggctttttt-aatgtttgtataatttttacatgtttgttaatgttgttgttattgtct 1072
|||| |||||| ||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 1017 ATGG-TTTTTTCAATGTTTGTATAATTTTTAAATCTTTGTTAATGTTGTTGTTATTGTGT 1075
Query 1073 tttct 1077
|||||
Sbjct 1076 TTTCT 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41935208700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5