BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G47485.1

Length=619
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg473891 jgi|Araly1|473891|fgenesh2_kg.1__3845__AT1G47485.1         763    0.0  


> Ahg473891 jgi|Araly1|473891|fgenesh2_kg.1__3845__AT1G47485.1
Length=543

 Score =  763 bits (413),  Expect = 0.0
 Identities = 466/491 (95%), Gaps = 5/491 (1%)
 Strand=Plus/Plus

Query  114  CTCATGGGAATGTCGAATAGGTCAGTTTCTACATC-CAtttttttCCTTGCATTGGTGGT  172
            ||||||||||||||||| ||||||||||||||||| | |||||||||| |||||||||||
Sbjct  56   CTCATGGGAATGTCGAACAGGTCAGTTTCTACATCTC-TTTTTTTCCTCGCATTGGTGGT  114

Query  173  TTTGCATGGAATTCAGGACACAGAAGAGAGACATTTGAAAACTACTTCGTTAGAGATTGA  232
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  115  TTTGCATGGAATTCAGGACACAGAAGAGAGACATTTGAAAACTACTTCGTTAGAGATTGA  174

Query  233  GGGAATTTATaaaaaaaCTGAGGCCGAGCATCCTAGCATTGTGGTCACATATACACGGCG  292
            |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct  175  GGGAATTTATAAGAAAACTGAGGCCGAGAATCCTAGCATTGTGGTCACATATACACGACG  234

Query  293  TGGTGTCCTTCAGAAGGAGGTCATTGCCCACCCCACAGACTTTAGGCCAACAAATCCCGG  352
            | |||||||||| |||| |||||| || ||||||||||| ||||||||||||||||| ||
Sbjct  235  TAGTGTCCTTCAAAAGGCGGTCATCGCACACCCCACAGATTTTAGGCCAACAAATCCTGG  294

Query  353  AAACAGCCCAGGCGTTGGACACTCTAACGGGCGACATTGATTCGATCATATCATACGTCA  412
            ||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||
Sbjct  295  AAACAGCCCAGGCGTTGGACACTCTCACGGGCGACACTGATTTGATCATATCATACGTCA  354

Query  413  T-AATCTTATATCATATAGAAAATTACATGTATTTTCATTCAGACTTGTCTTCTAATGCT  471
            | |||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct  355  TAAATC-TATATCATATAGAAAATTATATGTA-TTTCATTTAGACTTGTCTTCTAATGCT  412

Query  472  AAAGGGGTGTTTGGACATCACTTTATCATTTCAATGTTTTGACAGTACTATGATCATTAT  531
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  413  AAAGAGGTGTTTGGACATCACTTTATCATTTCAATGTTTTGACAGTACTATGATCATTAT  472

Query  532  GTCTTTGTCGTGGGTTTGTTACACTGTCACGTATTGTAAGATTATATAATGAATGAATTG  591
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct  473  GTCTTTGTCGTGGGTTTGTTACACTGTCAGGTATTGTAAGATTATATAATGAATAAATTG  532

Query  592  CTTTTAAAAAT  602
            |||||||||||
Sbjct  533  CTTTTAAAAAT  543



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22645012698


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5