BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47500.1
Length=1728
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473892 jgi|Araly1|473892|fgenesh2_kg.1__3846__AT1G47500.1 2307 0.0
> Ahg473892 jgi|Araly1|473892|fgenesh2_kg.1__3846__AT1G47500.1
Length=1718
Score = 2307 bits (1249), Expect = 0.0
Identities = 1555/1694 (92%), Gaps = 56/1694 (3%)
Strand=Plus/Plus
Query 62 AAACACAACTCTCAAAACTTCCCCTGTTTGGTCCGAAACCGAAACTACTAACCCTAATCT 121
||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 43 AAACACAACTCTCAAAACTTCCCCTGTTTGGTCCGAAACCG-AA--ACTAACCCTAA--T 97
Query 122 CTCACATCACAT-AAACAATCACTTCACATAGCCGCAAAATTTAATGGCAGACGTCAAGG 180
|||||||||||| | |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 98 CTCACATCACATCACACAA-CAC--CACATAGCCGCAAAATTTAATGGCAGACGTCAAGA 154
Query 181 TTCAATCCGAATCCGAATCCTCGGATTCTCATCCC-T--TGGTCGACTATCAATCACT-T 236
||||||||||||||||||||||||||||||| ||| | |||||||| ||||| || | |
Sbjct 155 TTCAATCCGAATCCGAATCCTCGGATTCTCAGCCCTTGGTGGTCGACAATCAACCA-TCT 213
Query 237 CCACCT--T-ATCCTCCGCCGCATCCACCGGTTGAAGTAGAGGAGAATCAACCAAAAACA 293
|||||| | ||| |||||||| ||||||||||||| ||| ||||||||||||||||||
Sbjct 214 CCACCTCCTCCTCCACCGCCGCAACCACCGGTTGAAGAAGAAGAGAATCAACCAAAAACA 273
Query 294 TCTCCGACTCCGCCGCCGCCACACTGGATGCGTTAT---CCACCGGTGTTAATGCCT--- 347
||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 274 TCTCCGACT---CCGCCGCCACACTGGATGCGTTATCCACCACCGGTGTTAATGCCTCCC 330
Query 348 CAGATGATGTACGCGCCGCCGCCACC-GATGCCGTTCTCACCTTATCATCAATATCCGAA 406
|||||||||||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct 331 CAGATGATGTACGCGCCGCCGCCACCTCAT-CCGTTCTCTCCTTATCATCAATATCCGAG 389
Query 407 TCACCACCACTTTCACCATCAATCTCGTGG---T------AATAAGCATCAAAACGCTTT 457
|||||| | | ||||||||||||||||||| | |||||| ||||||||||||
Sbjct 390 TCACCA-C-C-TTCACCATCAATCTCGTGGTAATAACAACAATAAGTATCAAAACGCTTC 446
Query 458 TAATGGTGAGAATAAAACTATTTGGGTTGGTGATTTGCAAAACTGGATGGATGAGGCTTA 517
|||||||||||||||||| |||||||||||||||||||| | |||||||||||| ||||
Sbjct 447 TAATGGTGAGAATAAAACCATTTGGGTTGGTGATTTGCATCATTGGATGGATGAGACTTA 506
Query 518 TCTTAATTCTGCTTTTACTTCCGC---CGAAGAGAGAGAGATTGTTTCGCTGAAGGTGAT 574
|||||||||| ||||| ||||||| || |||| | ||||||||||| ||||||||||
Sbjct 507 TCTTAATTCTTCTTTTGCTTCCGCTGACGGCGAGATACAGATTGTTTCGGTGAAGGTGAT 566
Query 575 TCGTAATAAGCACAATGGTTCATCGGAAGGATATGGATTTGTGGAGTTTGAGTCCCATGA 634
|||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||
Sbjct 567 TCGTAATAAGCACAATGGTTTATCAGAAGGATATGGATTTGTGGAGTTTGATTCCCATGA 626
Query 635 TGTAGCTGATAAGGTTTTGCAGGAGTTTAACGGGGCGCCTATGCCAAATACTGACCAACC 694
|||||||||||||||||||||||||||||| || || ||||||| ||||||| |||||
Sbjct 627 TGTAGCTGATAAGGTTTTGCAGGAGTTTAATGGAACGACTATGCCTGATACTGAGCAACC 686
Query 695 TTTTCGTTTGAACTGGGCTAGTTTTAGCACCGGTGAGAAGCGGTTAGAGAACAATGGACC 754
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 TTTTCGTTTAAACTGGGCTAGTTTTAGCACCGGTGAGAAGCGGTTAGAGAACAATGGACC 746
Query 755 TGATCTCTCTATATTT-GTTGGGGATTTGGCGCCAGATGTTTCGGATGCTTTGTTGCACG 813
|||||||||||| ||| ||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 747 TGATCTCTCTAT-TTTCGTTGGGGATTTGGCGCCGGATGTTTCGGATACTTTGTTGCACG 805
Query 814 AGACCTTCTCTGAGAAGTATCCGTCGGTTAAAGCTGCCAAAGTTGTCCTTGATGCTAATA 873
| | |||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||
Sbjct 806 AAATGTTCTCTGAGAAGTATCCGTCAGTTAAAGCTGCGAAAGTTGTCATTGATGCTAATA 865
Query 874 CTGGTAGATCAAAGGGGTATGGGTTTGTGAGGTTTGGAGATGAGAATGAAAGGACCAAAG 933
|||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 866 CTGGAAGATCAAAGGGGTATGGGTTTGTGAGGTTTGGTGATGAAAATGAAAGGACCAAAG 925
Query 934 CAATGACTGAGATGAATGGTGTTAAATGCTCTAGTAGAGCTATGCGTATCGGTCCTGCTA 993
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 926 CAATGACTGAGATGAATGGTGTTAAATGTTCTAGTAGAGCTATGCGTATCGGTCCTGCTA 985
Query 994 CCCCAAGGAAAACTAATGGTTATCAACAACAAGGTGGATACATGCCGAGTGGTGCCTTTA 1053
|||| ||||| |||| |||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 986 CCCCGAGGAAGACTACTGGTTATCAACAACAAGGTGGATACATGCCGAATGGTGCCTTGA 1045
Query 1054 CGCGTTCTGAAGGGGACACAATCAACACAACAATATTTGTTGGAGGGCTTGACTCTAGTG 1113
||||| |||||||||||||| | ||||||||||||||||||||||| |||||||||||||
Sbjct 1046 CGCGTCCTGAAGGGGACACATTGAACACAACAATATTTGTTGGAGGACTTGACTCTAGTG 1105
Query 1114 TCACTGATGAAGACTTAAAGCAACCTTTCTCTGAATTCGGGGAAATAGTGTCTGTCAAGA 1173
||||||| || ||| ||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1106 TCACTGACGACGACCTAAGGCAACCTTTCTCTGAATTCGGGGAAATAGTCTCTGTCAAGA 1165
Query 1174 TTCCTGTTGGTAAAGGATGCGGATTTGTTCAGTTTGTTAACAGACCAAATGCAGAGGAGG 1233
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1166 TTCCTGTTGGCAAAGGATGCGGATTTGTTCAATTTGTTAACAGACCAAATGCAGAGGAGG 1225
Query 1234 CTTTGGAAAAACTCAATGGGACTGTAATTGGCAAACAAACAGTCCGGCTTTCTTGGGGCC 1293
||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||
Sbjct 1226 CTTTGGAAAAACTCAATGGAACTGTAATTGGCAAACAAACAGTTAGGCTGTCTTGGGGCC 1285
Query 1294 GTAATCCAGCCAATAAGCAGCCTAGAGATAAGTATGGAAACCAATGGGTTGATCCGTACT 1353
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1286 GTAATCCAGCCAATAAGCAGCCTAGAGATAAGTATGGAAACCAATGGGTTGCGCCGTACT 1345
Query 1354 ATGGAGGACAGTTTTACAATGGGTATGGATACATGGTACCTCAACCTGACCCGAGAATGT 1413
| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1346 ACGGAGGACAGTATTACAATGGGTATGGATACATGGTACCGCAACCTGACCCGAGAATGT 1405
Query 1414 ATCCTGCTGCACCTTAC---------TATCCAATGTACGGTGGTCATCAGCAACAAGTTA 1464
|||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1406 ATCCCGCTGCACCTTACGGAGGAGGGTATCCAATGTACGGTGGTCATCAGCAACAAGTTA 1465
Query 1465 GCTGAGGAAACTAAAAGCTTAATCTGAGCATCTATCTATAGGACAACAAAAACTCACTCA 1524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1466 GCTGAGGAAACTAAAAGCTTAATCTGAGCATCTATCTATAGGACAACAAAAACTCACTCA 1525
Query 1525 GGTTAGGTGATGTTAGGAGGTATAAGGCAAAAGTGGTTGGCTTCTTGTCTCTACTTGAGT 1584
|||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||
Sbjct 1526 GGTTAGGTGATGTTAGGAGGTACAAGGCAAAAATGGTTGGCTTCTTGTCTCTCCTTGAGT 1585
Query 1585 TTAGGGTTTATCATCTTTTGGACATCGAATTTTGGTGGAAATCATACAGTAATTTAGGAG 1644
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1586 TTAGGGTTTATCATCTAGTGGACATCGAATTTTGGTGGAAACCATACAGTAATTTAGGGG 1645
Query 1645 ACTTGGATTTGATTGATTAATTTGATTTGTTTCTTCTGAT-CTTTTTGACTATTGAACTT 1703
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1646 ACTTGGATTTGATTGATTAATTTGATTTGTTTCTTCTGATGCTTTT-GACTATTGAACTT 1704
Query 1704 ATTGATCAAAGAAG 1717
||||||||||||||
Sbjct 1705 ATTGATCAAAGAAG 1718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64829596990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5