BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47530.1
Length=1810
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473896 jgi|Araly1|473896|fgenesh2_kg.1__3850__AT1G47530.1 2353 0.0
> Ahg473896 jgi|Araly1|473896|fgenesh2_kg.1__3850__AT1G47530.1
Length=1685
Score = 2353 bits (1274), Expect = 0.0
Identities = 1425/1499 (95%), Gaps = 6/1499 (0%)
Strand=Plus/Plus
Query 8 AAGCAAAGAAGAGAAACTAAAACAGAGCTTTTTTCACATGGGAAAGGATAAGACTTTGCC 67
|||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1 AAGCGAAGAAGAGAAACTAAAACAGAGC--TTCTCACATGGGAAAGGATAAGACTTTGCC 58
Query 68 GTTGCTTGACCCTCGTGAGCCACCGGAACTCACCGGAACCAAGTCGGCGTCAAAAGTATG 127
|||||||||||||||||| |||||||||||| |||||||||| |||||||| || |||||
Sbjct 59 GTTGCTTGACCCTCGTGAACCACCGGAACTCTCCGGAACCAAATCGGCGTCGAAGGTATG 118
Query 128 GGCCAAAGAGTTCGGCGAAGAGTCGAAGCGGCTTTGGGAGTTAGCAGGACCAGCGATTTT 187
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 119 GGCCAAAGAGTTCGGCGAAGAGTCGAAGCGGCTTTGGGAGCTAGCGGGACCAGCGATTTT 178
Query 188 CACTGCCATAAGTCAATACTCTCTTGGTGC-TCTCACTCAGACTTTCTCCGGCCGTCTCG 246
||| ||||||||||||||||||||||| || | | ||||||||||| || || |||||||
Sbjct 179 CACAGCCATAAGTCAATACTCTCTTGGAGCAT-TAACTCAGACTTTTTCTGGTCGTCTCG 237
Query 247 GTGAACTTGAGCTCGCCGCCGTCTCAGTTGAAAACTCTGTTATCTCCGGTCTTGCCTTCG 306
| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 238 GCGAACTTGAGCTCGCCGCCGTCTCTGTTGAGAACTCTGTTATCTCCGGTCTTGCCTTCG 297
Query 307 GTGTCATGTTAGGGATGGGGAGTGCATTGGAGACGTTGTGTGGACAAGCATATGGCGCGG 366
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 298 GTGTTATGTTAGGGATGGGGAGTGCATTGGAGACGTTGTGCGGACAAGCATATGGCGCGG 357
Query 367 GACAGATTAGGATGATGGGAATATATATGCAACGTTCATGGGTCATTCTCTTTACTACTG 426
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 358 GACAGATTAGGATGATGGGAATATATATGCAGCGTTCATGGGTCATTCTCTTTACCACTG 417
Query 427 CTTTGTTTTTGCTTCCCGTCTACATTTGGGCTCCTCCTATTCTTTCCTTCTTCGGCGAGG 486
|||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CTTTGTGTTTGCTCCCCGTTTACATTTGGGCTCCTCCTATTCTTTCCTTCTTCGGCGAGG 477
Query 487 CTCCTCACATCTCTAAAGCCGCGGGGAAGTTCGCATTGTGGATGATCCCGCAACTATTTG 546
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 478 CTCCTCACATCTCTAAAGCCGCGGGGAAATTCGCATTGTGGATGATTCCGCAACTATTTG 537
Query 547 CCTATGCAGCCAACTTCCCGATACAGAAATTCTTGCAGTCACAGAGGAAAGTTCTTGTGA 606
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 538 CCTATGCAGCCAACTTCCCGATACAGAAATTCTTGCAGTCACAGAGGAAAGTGCTTGTGA 597
Query 607 TGGCTTGGATCTCTGGAGTGGTTTTAGTTATACATGCAGTTTTTAGCTGGCTCTTCATTC 666
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 598 TGGCATGGATCTCTGGAGTGGTTTTAGTTATACACGCAGTGTTTAGCTGGCTCTTCATTC 657
Query 667 TTTACTTTAAGTGGGGACTTGTAGGTGCAGCTATCACTCTCAATACCTCGTGGTGGTTGA 726
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 658 TTTACTTTAAGTGGGGACTTGTAGGTGCAGCCATCACTCTCAATACCTCATGGTGGTTGA 717
Query 727 TTGTTATTGGTCAGCTTTTGTATAT-CTTAATCACCAAATCAGACGGTGCGTGGACTGGA 785
||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 718 TTGTTATCGGTCAGCTTTTGTATATAC-TAATCACCAAATCAGACGGTGCGTGGACTGGA 776
Query 786 TTTTCTATGCTAGCGTTTCGGGACCTCTATGGATTTGTCAAACTTTCCTTAGCCTCTGCT 845
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 777 TTTTCTATGCTGGCGTTTCGGGACCTCTACGGATTTGTCAAACTTTCCTTAGCATCTGCT 836
Query 846 CTTATGCTTTGTTTGGAGTTTTGGTACTTGATGGTTCTGGTTGTTGTTACCGGTCTCCTT 905
|| |||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||
Sbjct 837 CTCATGCTTTGTTTGGAATTTTGGTACTTGATGATTCTGGTTGTGGTTACCGGTCTCCTT 896
Query 906 CCTAACCCGTTGATACCAGTCGATGCCATCTCCATTTGCATGAATATAGAAGGGTGGACT 965
||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 897 CCTAATCCGTTGATACCAGTCGATGCCATTTCCATTTGCATGAACATAGAAGGGTGGACT 956
Query 966 GCCATGATTTCGATCGGGTTTAACGCTGCGATTAGTGTGAGAGTATCGAATGAGCTGGGT 1025
||||||||||| |||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct 957 GCCATGATTTCAATCGGGTTTAACGCTGCGATAAGTGTGAGGGTATCGAACGAGCTGGGT 1016
Query 1026 GCAGGAAACGCAGCGTTAGCCAAATTCTCAGTGATAGTCGTCTCCATAACTTCAACTCTT 1085
|| ||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1017 GCGGGAAATGCAGCTTTAGCAAAATTCTCAGTGATAGTTGTCTCCATAACTTCAACTCTT 1076
Query 1086 ATCGGGATAGTGTGCATGATTGTTGTCTTAGCCACAAAAGACAGCTTCCCTTATCTTTTC 1145
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1077 ATCGGGATTGTGTGCATGATTGTTGTCTTAGCCACAAAAGACAGCTTCCCTTATTTTTTC 1136
Query 1146 ACTTCAAGCGAAGCTGTGGCAGCAGAAACCACGAGAATAGCCGTCTTGTTGGGCTTCACT 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 ACTTCAAGCGAAGCTGTGGCAGCAGAAACCACGAGAATAGCCGTCTTGTTGGGCTTCACT 1196
Query 1206 GTCCTCTTGAACAGCCTCCAGCCCGTCTTGTCAGGGGTTGCGGTTGGAGCGGGGTGGCAG 1265
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1197 GTCCTCTTGAACAGCCTCCAGCCCGTCTTGTCAGGGGTTGCTGTTGGAGCTGGGTGGCAG 1256
Query 1266 GCTCTGGTTGCATACGTGAACATTGCGTGTTATTACATTATCGGACTACCTGCTGGTCTT 1325
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1257 GCTCTGGTCGCATACGTGAACATTGCGTGCTATTACATTATCGGACTTCCTGCTGGTCTT 1316
Query 1326 GTTCTTGGATTCACACTAGACCTCGGCGTTCAGGGAATATGGGGAGGTATGGTAGCTGGA 1385
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1317 GTTCTTGGATTCACACTAGACTTTGGCGTTCAGGGAATATGGGGAGGTATGGTAGCTGGA 1376
Query 1386 ATATGCTTGCAGACACTTATATTGATTGGAATCATCTACTTCACTAACTGGAACAAAGAG 1445
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 ATTTGCTTGCAGACACTTATATTGATTGGAATCATCTACTTCACTAACTGGAACAAAGAG 1436
Query 1446 GCTGAGCAAGCGGAGAGTCGAGTTCAGAGATGGGGAGGAACGGCGCAGGAGTGATCAAC 1504
|| |||||||| |||||||| |||||||||||||||||||| |||| ||||||||||||
Sbjct 1437 GCCGAGCAAGCCGAGAGTCGGGTTCAGAGATGGGGAGGAACAGCGCGGGAGTGATCAAC 1495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67952997080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5