BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47540.2
Length=479
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473897 jgi|Araly1|473897|fgenesh2_kg.1__3851__AT1G47540.2 625 1e-178
Ahg483464 jgi|Araly1|483464|fgenesh2_kg.4__2524__AT2G43520.1 207 4e-53
> Ahg473897 jgi|Araly1|473897|fgenesh2_kg.1__3851__AT1G47540.2
Length=392
Score = 625 bits (338), Expect = 1e-178
Identities = 377/395 (95%), Gaps = 5/395 (1%)
Strand=Plus/Plus
Query 1 GAAGTTGGCCATGGCAACGAAGTCAGTTTCTACCTTCGCCATCTTTTTCATCCTCGTTTT 60
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 GAAGTTGGCCATGACAACGAAGTCAGTTTCTACCTTCGCCATCTATTTCATCCTCGTTTT 60
Query 61 GGCTATCTTTGCAGAAACTCCTGAGATAGAAGCGTATGATAGGAAGTGCCTGAAAGAATA 120
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGTTATCTTTGCAGAAACGCCTGAGATAGAAGCGTATGATAGGAAGTGCCTGAAAGAATA 120
Query 121 CGGCGGCGATGTGGGTTTCAGCTACTGTGCACCTCGAATATTCCCGACGTTCTGTGATCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGGCGGCGATGTGGGTTTCAGCTACTGTGCACCTCGAATATTCCCGACGTTCTGTGATCA 180
Query 181 GAACTGCCGTAAGAACAAGGGCGCGAAAGGTGGAGTATGCCGTTGGGAAGAGAACAACGC 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 GAACTGCCGTAAGAACAAGGGCGCGAAAGGTGGAATATGCCGTTGGGAAGAGAACAACGC 240
Query 241 TATTGGTGTTAAATGCTTATGCAACTTCTGCAGCGAGGAACCCTCTGATCAA-ACTCTAA 299
||||||||||||||| ||||||||||||||||||||||| || ||| || || | |||||
Sbjct 241 TATTGGTGTTAAATGTTTATGCAACTTCTGCAGCGAGGAGCCTTCTTAT-AAGATTCTAA 299
Query 300 GTCGTATTTGAATCTTGCATGTGTCATGGTTTGTGTAACAAATCAA-GGTAAATGGTCCA 358
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 300 GTCGTATTTGAATCTTGCATGTGTCATGGTTTGTGTAACAA--CAAAGGTAAATGGTCCA 357
Query 359 AGTAACaatataataatgaataagcgaaataaaga 393
|||| |||||||||||||||||| ||||||||||
Sbjct 358 CGTAATAATATAATAATGAATAAGTGAAATAAAGA 392
> Ahg483464 jgi|Araly1|483464|fgenesh2_kg.4__2524__AT2G43520.1
Length=483
Score = 207 bits (112), Expect = 4e-53
Identities = 226/280 (81%), Gaps = 11/280 (4%)
Strand=Plus/Plus
Query 1 GAAGTTGGCCATGGCAACGAAGTCAGTTTCTACCTTCGCCATCTTTT-TCATCCTCGTTT 59
|||| | ||||||||||||||||||||||||||||| ||| | || | |||||||| |||
Sbjct 167 GAAGATAGCCATGGCAACGAAGTCAGTTTCTACCTTGGCCGT-TTCTGTCATCCTCTTTT 225
Query 60 TGGCTATCTTTGCAGAAACTCCTGAGATAGAAGCGTATGATAGGAAGTGCCTGAAAGAAT 119
||| |||||||| | || || |||||| ||||| | ||||| ||||| ||||||||||
Sbjct 226 TGGTTATCTTTG-A-AATG-CCAGAGATAAAAGCGCAAGATAGCAAGTGTCTGAAAGAAT 282
Query 120 ACGGCGGCGATGTGGGTTTCAGCTACTGTGCACCTCGAATATTCCCGACGTTCTGTGATC 179
| ||||| |||| |||||||| || ||||| ||||| ||||| ||| |||||||| |||
Sbjct 283 ATGGCGGTAATGTCGGTTTCAGTTATTGTGCGCCTCGGATATTTCCGTCGTTCTGTTATC 342
Query 180 AGAA-CTGCCGTAAGAACAAGGGCGCGAAAGGTGG-AGTATGCCGTT-GGGAAGAGAACA 236
||| |||||||||||| ||||| ||||| || || || |||||||| |||| | | |
Sbjct 343 -GAAACTGCCGTAAGAATAAGGGTGCGAAGGGAGGTAG-ATGCCGTTCGGGAGGGGCAGG 400
Query 237 ACGCTATTGGTGTTAAATGCTTATGCAACTTCTGCAGCGA 276
| ||| |||| | | ||| |||||| ||| |||||||||
Sbjct 401 A-GCTGGTGGTATGATATGTTTATGCGACTACTGCAGCGA 439
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17360792995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5