BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47570.1
Length=1938
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473901 jgi|Araly1|473901|fgenesh2_kg.1__3855__AT1G47570.2 2490 0.0
> Ahg473901 jgi|Araly1|473901|fgenesh2_kg.1__3855__AT1G47570.2
Length=1757
Score = 2490 bits (1348), Expect = 0.0
Identities = 1625/1751 (93%), Gaps = 49/1751 (3%)
Strand=Plus/Plus
Query 13 TCAAATCGGTAACGTACGGTCTCATTTGAGATATTCCGGTGTGTGCA-ACAGTTACACCA 71
|||||| |||||||||||| |||||||| ||||||||||| ||||| || ||||||| |
Sbjct 1 TCAAATTGGTAACGTACGG--TCATTTGACATATTCCGGTGAGTGCAGACTGTTACACAA 58
Query 72 ATTAAACCTTTTCCTTaaaaaa-taaaaaTGGAGAGATTCTTCTACAGAGAGAAACCCTA 130
|| ||||| |||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 59 ATCAAACC-TTTCTTTAAAAAATTAAAAATGGAGAGATTCTTCAACAGAGAGAAACCCT- 116
Query 131 AAGACCAAAATAGGAATCGTGCCTATCACTCTCTTTCTCGAATCATCTTCTTCCTCGCGA 190
||||||| | ||||||||||| || ||||||||||||||||||||||||||| ||||||
Sbjct 117 -AGACCAATAGAGGAATCGTGCTTACCACTCTCTTTCTCGAATCATCTTCTTCTTCGCGA 175
Query 191 AGAGACTTCCTTTAGTTTCTGTTGAAATCTCTTATTTGCG-GTGATGAACTTTGAAATTT 249
||||||| | |||||||||||||||||||||||||| || || || ||||||||||||
Sbjct 176 CGAGACTTTC-TTAGTTTCTGTTGAAATCTCTTATTTTCGAGT-ATCTACTTTGAAATTT 233
Query 250 GATTCCAGAAGTCCGATGACGACGACGGCGGAAACTGGGCAATCCTCTGGTTCGAAACCC 309
||||||||||||||||| |||||||||||||||||| |||||||||||||| ||| ||
Sbjct 234 GATTCCAGAAGTCCGAT---GACGACGGCGGAAACTGGACAATCCTCTGGTTCTAAAACC 290
Query 310 TCTGATGATGATGCATGGGCCAAAC--T--G----G-------TTCCTCTGGACACCAGA 354
|| ||||||||||||||| |||| | | | ||||||||||||| |||
Sbjct 291 TC---TGATGATGCATGGGCTAAACTGTCAGTATTGTTTCCTTTTCCTCTGGACACTAGA 347
Query 355 TTCTCTGACATTGAGATTAGGTGCAATGATATGGTAATATGCTCTGAGATTAAACCGTCT 414
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 348 TTCTCAGACATTGAGATTAAGTGCAATGATATGGTAATATGCTCTGAGATTAAACCGTCT 407
Query 415 TCCCTGGAAAAACATGAATGGTGCAGAATAACTAAGAATTTGGGTCAAAGTTCTGCCACT 474
||| | || | ||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 408 TCCGTAGAGAGACATGAATGGTGCAGAATAACTAAGAATTTGGGTCAAGGTTCTGCTACT 467
Query 475 ATACATAATAAGAGTTCGGATGCTATACTTGTTGACAAGGCTGTTGTCCCGAAAGATGGT 534
|||||||||||||||||||||| |||||||||||| ||||||| |||||| |||||||
Sbjct 468 ATACATAATAAGAGTTCGGATGTTATACTTGTTGATGAGGCTGTCATCCCGATAGATGGT 527
Query 535 GCTGTTGATATCATTAGTGGATCTGAAATTGTTCCTGGCCCTGAAGAACAAGGGTACTTG 594
||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 528 GCTGTCGATATCATTAGTGGATCTGAAATTGTTCCTGGCCCTGAAGGACAAGGTTACTTG 587
Query 595 CAGTACAGATTTACAATAATGCCTGCTCCAGAATCCAGAACCCAGCTATTACAGATTTCC 654
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 588 CAGTACAGATTTACAATAATGCCAGCTCCAGAATCCAGAACTCAGCTATTACAGATTTTA 647
Query 655 ATAGATCCTGAACATGCAAAATGCAGTATCTGCTTAAACATATGGCATGATGTTGTCACA 714
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 648 ATAGACCCCGAACATGCAAAATGCAGTATCTGCTTAAACATATGGCACGATGTTGTCACA 707
Query 715 GCTGCACCTTGCCTTCATAATTTCTGTAATGGCTGTTTTTCAGAATGGATGCGGAGATCG 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 GCTGCACCTTGCCTTCATAATTTCTGTAATGGCTGTTTTTCAGAATGGATGCGGAGATCG 767
Query 775 GAGGAAAAACATAAACATGTGTTATGTCCACAGTGCAGAACAACAGTACAATATGTGGGA 834
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 GAGGAAAAACATAAACATGTGTTATGTCCACAGTGCAGAACAACAGTACAATATGTGGGG 827
Query 835 AAAAATCATTTTCTGAAGAACATACAAGAGGAAATATTAAAAGTGGATGCTGCACTGAGG 894
|||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 828 AAAAATCATTTTCTAAAAAACATACAAGAGGATATATTAAAAGTGGATGCTGCACTGAGA 887
Query 895 CGACCAGCTGAAGATATTGCAGTGTTGGACTCATCTGCATCGATACAATCAAATCTTATC 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 CGACCAGCTGAAGATATTGCAGTGTTGGACTCATCTGCATCGATACAATCAAATCTTATC 947
Query 955 ATTGGGAGCAAGAGAAAACGTCGATTGAATATGCC-TGCGCCCACACATGAAGAAAGAGA 1013
||||||||||||||||||||||| ||||||||||| | ||||||||| ||||||||||||
Sbjct 948 ATTGGGAGCAAGAGAAAACGTCGTTTGAATATGCCCT-CGCCCACACTTGAAGAAAGAGA 1006
Query 1014 TAGCTTGCGTTTGCAATGCCCACAATGTGTTGCTAATATTGGTG-GTTATCGGTGTGAAC 1072
|| ||||||||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct 1007 TAACTTGCGTTTGCAATGCCCACAATGTGTTGCTAATATTGG-GAGCTATCGGTGTGAAC 1065
Query 1073 ATCATGGTGCACATCTGCAATGCCACCTGTGTCAAGGAATGATGCCCTTTAGAGCCAATC 1132
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1066 ATCATGGTGCGCATCTGCAATGTCACCTGTGTCAAGGAATGATGCCCTTTAGAGCCAATC 1125
Query 1133 TCCAAGTGCCGTTACACTGCAAGGGATGCGATAGGCCGTTTTGCGGTGCTTACTGGAGTT 1192
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1126 TCCAAGTGCCGTTACACTGCAAGGGATGTGATAGGCCGTTTTGCGGTGCTTACTGGAGTT 1185
Query 1193 CCGAGAATGTTACACAAGGTGTATCTGGTCCAGTCTGCGTTCGCGAAACTTTTAGACCTA 1252
|||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||
Sbjct 1186 CCGAGAATGTTACACAAGGTGTATCTAGTCCAGTCTGCGGTCGCGAAACTTTCAGACCTA 1245
Query 1253 TCTCGGAACGCACAATTACAAGGATTCCATTCATAACCCATGAAATGAATCGCCATGAAC 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 TCTCGGAACGCACAATTACAAGGATTCCATTCATAACCCATGAAATGAATCGCCATGAAC 1305
Query 1313 AAGATATAACGCAAAGATGCATTGCCCATATGGAGAAAACTGTGCCGGATGTTGTAGCAG 1372
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1306 AAGATATAACGCAAAGATGCATTACCCATATGGGGAAAACTGTGCCGGATGTTGTAGCAG 1365
Query 1373 AGTGGCTCAGGCTTTTCAACAATAGAGAAATAGACCGCTCGAGAATGCCTCTGAATCATG 1432
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1366 AGTGGCTCAGGCTTTTCAACAATAGAGAAATCGACCGCTCGAGAATGCCTCTCAATCATG 1425
Query 1433 CTGAGACGATAACTGCATCAACACATGTTTGCAATGATTGTTATGATAAGCTGGTGGGAT 1492
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1426 CTGAGATGATAACTGCATCAACACATGTTTGCAATGATTGTTATGATAAGCTGGTGGGGT 1485
Query 1493 TCCTTTTATACTGGTTCCGGATAACACTGCCGAGAAATCATTTGCCAGCGGATGTAGCG- 1551
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1486 TCCTTTTATACTGGTTCCGGATAACACTGCCGAGAGATCATTTGCCAGCGGATGTAG-GA 1544
Query 1552 GCTAGGGAAGATTGTTGGTATGGATACGCATGTAGGACACAACACCACAACGAAGATCAT 1611
|| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1545 GCGAGAGAAGATTGTTGGTATGGATACGCATGTAGGACACAACACCACAACGAAGAACAT 1604
Query 1612 GCTCGTAAACGTAACCATGTATGTCGCCCTACCAGAGGGAACCATCACTTTTAGTCCGCT 1671
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1605 GCTCGTAAACGTAACCATGTATGTCGTCCTACCAGAGGGAACCATCACTTTTAGTCCGCA 1664
Query 1672 TTTCATCTTT--TC-------TTTTGATTATATTTTGGGATA-T-TCTGTATGAGTAGTT 1720
|||| ||||| || |||||||| |||||||||||| | |||||||||||| |
Sbjct 1665 TTTCGTCTTTCCTCGACAAGCTTTTGATTGTATTTTGGGATAATCTCTGTATGAGTACT- 1723
Query 1721 AGAAACTGTTC 1731
|||||||||||
Sbjct 1724 AGAAACTGTTC 1734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72828548440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5