BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47580.1
Length=814
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473903 jgi|Araly1|473903|fgenesh2_kg.1__3857__AT1G47580.1 1109 0.0
> Ahg473903 jgi|Araly1|473903|fgenesh2_kg.1__3857__AT1G47580.1
Length=1295
Score = 1109 bits (600), Expect = 0.0
Identities = 724/784 (92%), Gaps = 7/784 (1%)
Strand=Plus/Plus
Query 4 ATTGACCACAAAGGGATGGCTCTGGAAGCTGCTTTCTCCATGAGTTTTTGCTCCTTCTCT 63
|||||| | ||| ||||||| |||||| ||||||||||||||||||||||||||||| ||
Sbjct 517 ATTGACGAGAAAAGGATGGCACTGGAAACTGCTTTCTCCATGAGTTTTTGCTCCTTCCCT 576
Query 64 GTCCCTAAAGCAATCTTCTGTGAGAGAGAAACTTCATCTTTTCAACGAATCACCTCGAGA 123
||||| || |||||||||| |||||||||||||||||||||||||||| ||| |||||||
Sbjct 577 GTCCCCAAGGCAATCTTCTTTGAGAGAGAAACTTCATCTTTTCAACGAGTCATCTCGAGA 636
Query 124 GCAAAGGGAATTGCGGGTGAGAGTCAAGTTCAAAGCTCTGATGGAGTTGAGACTCAAGTC 183
|||||||||||||| |||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 637 GCAAAGGGAATTGCCGGTGAGGGTCAAGTTGAAAGCTCTGATGGAATTGAGACTCAAGTC 696
Query 184 AAGGAAACTTCTCCCAAAGTATTTGATAAACTGCCTGAAAGAAATTTAGATACTTGGAGC 243
||||||||| ||| ||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 697 AAGGAAACTGCTCACAAAGTATTTGATAAACTGCCTGAAAGAAGTGTAGATACTTGGAGT 756
Query 244 GGTGGCAGAGAAACAGCAAGAGGACTTTCAGGTTCAGTAGTAAGAAACACTGTACGAAAA 303
|||||||||| |||||||| || ||||||||| ||||||||||||||||| |||||||||
Sbjct 757 GGTGGCAGAGTAACAGCAAAAGAACTTTCAGGCTCAGTAGTAAGAAACACGGTACGAAAA 816
Query 304 GATACTACTTTACGACATATCTCACCTTCTAGTCATTCAACAAAGGTTAGAGGAGATAAG 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 GATACTACTTTACGACATATCTCACCTTCTAGTCATTCAACAAAGGTTAGAGGAGATAAG 876
Query 364 CCAGAGATTTCAGGGGGTGAGAAGAAAGCTATTGTAGATAGAAGCAAGGCCTACGTAAAG 423
|| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 CCGGAGATTTTAGG---TGAGAAGAAAGCTATTGTAGATAGAAGCAAGGCCTACGTAAAG 933
Query 424 CTGAAATCTTTAGGGAAAGAAGTGAGAGACGCAGGCTATGTACCAGAGACTAAGTATGTT 483
||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 934 CTGAAGTCTTTAGGAAAAGAAGTGAGAGACGCAGGCTATGTACCAGAGACGAAGTACGTT 993
Query 484 CTTCACGACATTGATGAAGAAGCTAAAGAGAAAGCCTTGATGCATCATAGTGAACGGTTA 543
||||| || |||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 994 CTTCATGATATTGATGAAGAAGCTAAAGAGAAAGCATTGATGCATCACAGTGAACGATTA 1053
Query 544 GCTATTGCTTTCGGGATTATAAACACTCCTCCAGGGACGACAATAAGGGTGATGAAGAAT 603
||||||||||||||| |||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 1054 GCTATTGCTTTCGGGCTTATAAACACGCCTCCAGGGACAACGATAAGGGTGATGAAGAAT 1113
Query 604 CTGAGGATATGTGGAGATTGCCATAACTTCATAAAGATATTATCGAGTATCGAAGATAGA 663
||||| ||||| ||||||||||| ||||||||||||||| |||||||||| |||||||||
Sbjct 1114 CTGAGAATATGCGGAGATTGCCACAACTTCATAAAGATACTATCGAGTATTGAAGATAGA 1173
Query 664 GAGATCATTGTAAGAGATAACAAGAGGTTCCATCATTTTAGAGATGGTAACTGCTCTTGT 723
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1174 GAGATCATTGTAAGAGATAACAAGAGGTTTCATCATTTTAGAGATGGTAGCTGCTCTTGT 1233
Query 724 GGAGATTATTGGTAGACTTTTGTATTAAAAGATGTGAAATTCTA-CAAAGTT-ATACTAA 781
||||||||||||||||||||||||| |||| |||||| || || || | || ||||| |
Sbjct 1234 GGAGATTATTGGTAGACTTTTGTATGAAAATATGTGATTTT-TAACACA-TTGATACTTA 1291
Query 782 ACTA 785
||||
Sbjct 1292 ACTA 1295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30078981513
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5