BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47590.1
Length=1173
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913766 jgi|Araly1|913766|Al_scaffold_0001_4020 1692 0.0
Ahg473904 jgi|Araly1|473904|fgenesh2_kg.1__3858__AT1G47603.1 1238 0.0
> Ahg913766 jgi|Araly1|913766|Al_scaffold_0001_4020
Length=1173
Score = 1692 bits (916), Expect = 0.0
Identities = 1068/1141 (94%), Gaps = 11/1141 (1%)
Strand=Plus/Plus
Query 40 CAAGAAGAAGAAGCTAATATTGGAGTTAAGAATCAACCAAGAGCAACGACATCAATAGCT 99
||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||
Sbjct 37 CAAGAAGAAGAAGCTAATATTGGAGTTGAGAATCAACCAAGAGCAACAACTTCAATAGC- 95
Query 100 TC-TGATCGGTCACAAATTCTCAAGACACGAAACTGGTGGATTTGTATCTTTGTCTGCTC 158
|| |||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||
Sbjct 96 TCTTGATCGGTCACAAAATCTTAAGACAAGAAACTGGTGGATTTGTATCTTTGTCTGCTC 155
Query 159 TGGTTTTGTCGTAACAGGACGTGTTTTATCAACACTTCTTTTAAACTACTACTTCATCCA 218
|||||| ||||||||||||||||||||||||||||||||| |||||| ||| |||| |||
Sbjct 156 TGGTTTGGTCGTAACAGGACGTGTTTTATCAACACTTCTTCTAAACTTCTATTTCAACCA 215
Query 219 AACAGGACGTGATGCTTGTGACGATCCAAAACAATTTAAAGGAACCTGGCTTCAATCTTT 278
||||||| | |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 216 AACAGGAAGAGATGCTTGTGACGATCCAAAACAATTTAAAGGCACATGGCTTCAATCTTT 275
Query 279 TCTCCAAAACGCTGCGTTTCCATCTATAGCCTTCCTTCTT-CTCTTGTGGCGTTCTTTAT 337
| |||||||||||||||||||||||||||||||| || || ||||| |||||||||| ||
Sbjct 276 TGTCCAAAACGCTGCGTTTCCATCTATAGCCTTCATT-TTCCTCTTATGGCGTTCTTCAT 334
Query 338 TCTCCACTCATGGAGAAACTCAAtc-t--tcttcttcttttggaaaactctttcttcttt 394
||||||||||| ||||||||||||| | ||||||| |||||| ||||||||| ||||||
Sbjct 335 TCTCCACTCATAGAGAAACTCAATCTTCGTCTTCTTTTTTTGGCAAACTCTTTATTCTTT 394
Query 395 acatctctctcggtgtcctcttttcGGCTTATAGCCAACTCTACGCAATTGGGAGAACTC 454
|| ||||||||||| |||||| | ||||||||||||||||||| ||||||||||||||||
Sbjct 395 ACCTCTCTCTCGGTTTCCTCTCTGCGGCTTATAGCCAACTCTATGCAATTGGGAGAACTC 454
Query 455 ATTGTGTGTTCTTCTTTTGGATCTTTACTACACAATTGATCTTCACTTCCATATTTACAG 514
||||||||||||||||||||||||| || |||||| |||||||||||||||| |||||||
Sbjct 455 ATTGTGTGTTCTTCTTTTGGATCTTCACAACACAACTGATCTTCACTTCCATCTTTACAG 514
Query 515 CGATTATTAACAAACACAAATTCAACCGTTGGATCATATTATCCATCGTCCTTTCTGGAG 574
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 CAATTATCAACAAACACAAATTCAACCGTTGGATCATATTATCCATCGTCCTTTCTGGAG 574
Query 575 TTGCTACGGGCATTACATCTTCGGATGATGCCTATTATCCCTGCGAAAGTGAAGGATGGA 634
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 575 TTGCCACGGGCATTACATCTTCGGATGACGCCTATTATCCCTGCGAAAGTGAAGGCTGGA 634
Query 635 AAATGAGCTACGGTGCTTGGTGTAG-CTTCTTTGGCACGGTAGCCTTCTCTTTATCTCTA 693
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 635 AAATGAGCTACGGTGCTTGGTGT-GCCTTCTTTGGCACGGTAGCCTTCTCTTTATCTCTA 693
Query 694 TGTATCATGCAATTAGGGTTCCAAAAGGTTATACCTAAGACAGAGAGTAGAGTTTCCGCG 753
|||||||||||||| |||||||||||||| |||||||| |||||||||||||||||| ||
Sbjct 694 TGTATCATGCAATTGGGGTTCCAAAAGGTCATACCTAACACAGAGAGTAGAGTTTCCACG 753
Query 754 GTGATGTTGATGCAAACCAATGCTTCTATGATTGCAACGTTGATATGTTTGGTTGGATTG 813
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 754 GTGATGTTGATGCAAACCAATGCTTCTATGATTGCAACATTGATATGTTTGGTTGGATTA 813
Query 814 TTTGTAAGCGGTGAGTTCAAAGATATCAAGGAAGATTTCGAGACGTTTAA-AACGGGGAA 872
|| ||||| |||| | ||||||||| || |||||||||||||||||||| || ||||||
Sbjct 814 TTCATAAGCAGTGAATACAAAGATATAAAAGAAGATTTCGAGACGTTTAAGAA-GGGGAA 872
Query 873 GCCACTTTACGTTTTGAGTCTTATCGGATTATCACTTGCATGGCAAGTAATGTCTTTAGG 932
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 873 GCCACTTTACGTTTTGAGTCTCATCGGATTATCACTTGCATGGCATGTAATGTCTTTAGG 932
Query 933 GCTTGTGGGTCTTGTGTGTTTGGCTTCTTCCCTTTTCTCTAATGTTGTCAGCTTCTCCGC 992
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 933 ACTTGTGGGTCTTGTGTGTTTGGCTTCTTCTATTTTCTCTAATGTTGTCAACTTCTCCGC 992
Query 993 GACACCTGTAGCGAACATTTTCGTTGTGTTGGCGTTTCGGTTTATGGATGACGACATTGG 1052
|||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 993 CACACCTTTAGCGAACATTTTTGTTGTTTTGGCGTTTCGGTTTATGGATGACGACATTGA 1052
Query 1053 ATGGTTTAAGGGAGGAGCTCTGTTAGCTGGGATCCTTGGGTTTGCATCTTATGTATATTC 1112
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1053 ATGGTTTAAGGGAGGAGCTCTGTTAGCTGGGATCCTTGGGCTTGCATCTTATGTATATTC 1112
Query 1113 CTTGTACAAGGCTATTAAGAAACAGGAAATAGCAAGCCAAACTGAATTAGTAAGAGTATG 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 CTTGTACAAGGCTATTAAGAAACAGGAAATAGCAAGCCAAACTGAATTAGTAAGAGTATG 1172
Query 1173 A 1173
|
Sbjct 1173 A 1173
> Ahg473904 jgi|Araly1|473904|fgenesh2_kg.1__3858__AT1G47603.1
Length=1170
Score = 1238 bits (670), Expect = 0.0
Identities = 986/1134 (87%), Gaps = 40/1134 (4%)
Strand=Plus/Plus
Query 40 CAAGAAGAAGAAGCTAATATTGGAGTTAAGAATCAACCAAGAGCAACGACATCAATAGCT 99
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 37 CAAGAAGAAGAAGCAAATATTGGAGTTGAGAATCAACCAAGAGCAACGACATCAACAGC- 95
Query 100 TC-TGATCGGTCACAAATTCTCAAGACACGAAACTGGTGGATTTGTATCTTTGTCTGCTC 158
|| |||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 96 TCTTGATAGGTCACAAATTCTTAAGACACGAAACTGGTGGATTTGTATATTTGTCTGCTC 155
Query 159 TGGTTTTGTCGTAACAGGACGTGTT-TTATCAACACTTCTTTTAAACTACTACTTCATCC 217
||||| |||| | ||||||||||| || || ||||||||| |||||| |||||||||||
Sbjct 156 AGGTTTGGTCGCAGCAGGACGTGTTCTT-TCCACACTTCTTCTAAACTTCTACTTCATCC 214
Query 218 AAACAGGACGTGATGCTTGTGACGATCCAAAACAATTTAAAGGAACCTGGCTTCAATCTT 277
||| | || | ||| |||||| || ||||||| ||||| |||||| ||||| || ||||
Sbjct 215 AAATAAGAAGAAATGTTTGTGATGACCCAAAACGATTTAGAGGAACATGGCTCCAGTCTT 274
Query 278 TTCTCCAAAACGCTGCGTTTCCATCTATAGCCTTCCTTCTTCTCTTGTGGCGTTCTTTAT 337
| ||||||||||||||||||| |||| ||||||||||||||||| |||||||||| ||
Sbjct 275 TAGTCCAAAACGCTGCGTTTCCTTCTACGGCCTTCCTTCTTCTCTTATGGCGTTCTTCAT 334
Query 338 TCTCCACTCATG-GAGAAAC-TC-AAt-c---ttcttcttcttttggaaaactctttctt 390
||||||| || | ||||||| || | | | || ||| |||||||| ||||||||||||
Sbjct 335 TCTCCACCCA-GAGAGAAACTTCTACTCCTTGTTATTCGTCTTTTGGCAAACTCTTTCTT 393
Query 391 ctttacatctctctcggtgtcctcttt-tcGGCTTATAGCCAACTCTACGCAATTGGGAG 449
||||||||||||||||| ||||||||| | |||||||||||||||||| || ||||||||
Sbjct 394 CTTTACATCTCTCTCGGCGTCCTCTTTGT-GGCTTATAGCCAACTCTATGCTATTGGGAG 452
Query 450 AACTCATTGTGTGTTCTTCTTTTGGATCTTTACTACACAATTGATCTTCACTTCCATATT 509
|||||||| | |||| |||||||||||||||||| | |||||||| ||||| ||||||||
Sbjct 453 AACTCATTCTCTGTTTTTCTTTTGGATCTTTACTTCCCAATTGATTTTCACATCCATATT 512
Query 510 TACAGCGATTATTAACAAACACAAATTCAACCGTTGGATCATATTATCCATCGTCCTTTC 569
|||| | || || |||||||| ||||||||||||||||||||||||||||| || | |
Sbjct 513 TACAACAATCATCAACAAACAAAAATTCAACCGTTGGATCATATTATCCAT-GTGC--AC 569
Query 570 TGGAGTTGC-TACGGGCATTACATCTTC-GGATGATGCCTATTA-TCCCTGCG--AA-AG 623
|| || || |||||||||||||| || ||| ||||| || |||||||| || |
Sbjct 570 ---AG--GCTTA--GGCATTACATCTTCAGG-TGACGCCTA-TATTCCCTGCGAAAATAA 620
Query 624 TGAAGGATGGAA-AATGAGCT-ACGGTGCTTGGTGTAGCTTCTTTGGCACGGTAGCCTTC 681
|||||| | || |||||| | |||| ||||||||| |||||| ||||||||||| |||
Sbjct 621 TGAAGGCT-CAAGAATGAG-TAACGGCGCTTGGTGTTCCTTCTTCGGCACGGTAGCATTC 678
Query 682 TCTTTATCTCTATGTATCATGCAATTAGGGTTCCAAAAGGTTATACCTAA-GACAGAGAG 740
||| ||||| ||||||||||||||||||| ||||||||||| ||||| || ||||||||
Sbjct 679 TCTCTATCTTTATGTATCATGCAATTAGGATTCCAAAAGGTCATACC-AACTACAGAGAG 737
Query 741 TAGAGTTTCCGCGGTGATGTTGATGCAAACCAATGCTTCTATGATTGCAACGTTGATATG 800
||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||
Sbjct 738 TAGAGTTTCCGCGGTGATGCTGATGCAAACCAATGCTTCAATGATTGCAACATTGATATG 797
Query 801 TTTGGTTGGATTGTTTGTAAGCGGTGAGTTCAAAGATATCAAGGAAGATTTCGAGACGTT 860
|||||| || || || ||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 798 TTTGGTAGGGTTATTCGTAAGCGGTGAATTCAAAGATATCAAGGAAGATTTGGAAACGTT 857
Query 861 TAA-AACGGGGAAGCCACTTTACGTTTTGAGTCTTATCGGATTATCACTTGCATGGCAAG 919
||| || |||||||| |||||| |||| |||||| || |||||||||||||| |||||||
Sbjct 858 TAAGAA-GGGGAAGCAACTTTATGTTTGGAGTCTAATTGGATTATCACTTGCGTGGCAAG 916
Query 920 TAATGTCTTTAGGGCTTGTGGGTCTTGTGTGTTTGGCTTCTTCCCTTTTCTCTAATGTTG 979
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 917 TAATGTCTTTAGGGCTTGTGGGGCTTGTGTGTTTGGCTTCTTCTCTTTTCTCTAATGTTG 976
Query 980 TCAGCTTCTCCGCGACACCTGTAGCGAACATTTTCGTTGTGTTGGCGTTTCGGTTTATGG 1039
||||||||| ||| | |||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 977 TCAGCTTCTGCGCAATACCTTTAGCGAACATTCTCCTTGTGTTGGCGTTTCGGTTTATGG 1036
Query 1040 ATGACGACATTGGATGGTTTAAGGGAGGAGCTCTGTTAGCTGGGATCCTTGGGTTTGCAT 1099
||| |||| || || ||||||| |||||||||| |||||||||| ||||| |||||||
Sbjct 1037 ATGCCGACGTTAAATATTTTAAGGAAGGAGCTCTGGTAGCTGGGATTCTTGGTTTTGCAT 1096
Query 1100 CTTATGTATATTCCTTGTACAAGGCTATTAAGAAACAGGAAATAGCAAGCCAAA 1153
||||||||||||||||||| ||| ||| |||||| ||||||||||||||||||
Sbjct 1097 CTTATGTATATTCCTTGTATAAGTCTACCAAGAAAAAGGAAATAGCAAGCCAAA 1150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43765108716
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5