BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47603.1
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473904 jgi|Araly1|473904|fgenesh2_kg.1__3858__AT1G47603.1 1568 0.0
Ahg913766 jgi|Araly1|913766|Al_scaffold_0001_4020 1312 0.0
> Ahg473904 jgi|Araly1|473904|fgenesh2_kg.1__3858__AT1G47603.1
Length=1170
Score = 1568 bits (849), Expect = 0.0
Identities = 1082/1191 (91%), Gaps = 30/1191 (3%)
Strand=Plus/Plus
Query 1 ATGGGTTTCCACACAAAATCGCCGGACCGAGTAACTCATGAAGAAGAAGAAGCAAATATA 60
||||||||||| || ||||| ||||||||| ||| || |||||||||||||||||||
Sbjct 1 ATGGGTTTCCATACCAAATCTCCGGACCGAATAA--CA-CAAGAAGAAGAAGCAAATATT 57
Query 61 GGAGTTGATAATCAACCAAGAGAAACGACATCAACATCTCTTAATAGGTCACAAATTATT 120
|||||||| ||||||||||||| ||||||||||||| ||||| |||||||||||||| ||
Sbjct 58 GGAGTTGAGAATCAACCAAGAGCAACGACATCAACAGCTCTTGATAGGTCACAAATTCTT 117
Query 121 AAGACAAGAAACTGGTGGATTTGTATCTTTGTCTGCTC-GTGTTTGGTCGTAGCAGGACG 179
|||||| ||||||||||||||||||| ||||||||||| | ||||||||| |||||||||
Sbjct 118 AAGACACGAAACTGGTGGATTTGTATATTTGTCTGCTCAG-GTTTGGTCGCAGCAGGACG 176
Query 180 TGTT-TTATCCACCCTTCTTTTAAACTTCTACTTCATCCAAACAGGACGAGATGTTTGTG 238
|||| || ||||| |||||| ||||||||||||||||||||| | || || |||||||||
Sbjct 177 TGTTCTT-TCCACACTTCTTCTAAACTTCTACTTCATCCAAATAAGAAGAAATGTTTGTG 235
Query 239 ATGACCCAAAGCAATTTAAAGGCACATGGCTCCAGTCTATGGTCCAAAACGCTGCGTTTC 298
|||||||||| | ||||| ||| ||||||||||||||| | |||||||||||||||||||
Sbjct 236 ATGACCCAAAACGATTTAGAGGAACATGGCTCCAGTCTTTAGTCCAAAACGCTGCGTTTC 295
Query 299 CTTTTACAGCctttcttcttctcttatggcgttcttcattttccacccatagtgaaactt 358
||| ||| ||||| |||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 296 CTTCTACGGCCTTCCTTCTTCTCTTATGGCGTTCTTCATTCTCCACCCAGAGAGAAACTT 355
Query 359 c--ct-cttcttcttcttcttttggcaaactctttcttctttacatctctctcGGCGTCC 415
| || ||| || ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CTACTCCTTGTTATTCGTCTTTTGGCAAACTCTTTCTTCTTTACATCTCTCTCGGCGTCC 415
Query 416 TATTTGCGGCTTATAGCCAACTCTATGCAATTGGGCGAACGCATTGTGTGTTCTTCTTGT 475
| |||| ||||||||||||||||||||| |||||| |||| |||| | |||| ||||| |
Sbjct 416 TCTTTGTGGCTTATAGCCAACTCTATGCTATTGGGAGAACTCATTCTCTGTTTTTCTTTT 475
Query 476 GGATCTTTACTTCCCAATTGATTTTCACTTCCATATTTACAACAATTATCAACAAACAAA 535
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 476 GGATCTTTACTTCCCAATTGATTTTCACATCCATATTTACAACAATCATCAACAAACAAA 535
Query 536 AATTCAACCGTTGGATCATATTATCCATGGTCCTTTCTGGAGCTGCCACAGGCTTAGGCA 595
||||||||||||||||||||||||||| | | || ||||||||||||||
Sbjct 536 AATTCAACCGTTGGATCATATTATCCA----------T---G-TG-CACAGGCTTAGGCA 580
Query 596 TTACATCTTCAGGTGGCGCCTATATTCCCTGCG--AA-AATGAAGGCTCAAAAATGAGTA 652
||||||||||||||| ||||||||||||||||| || ||||||||||||| ||||||||
Sbjct 581 TTACATCTTCAGGTGACGCCTATATTCCCTGCGAAAATAATGAAGGCTCAAGAATGAGTA 640
Query 653 ACGGCGCTTGGTGTGCCTTCTTTGGCACGGTAGCATTCTCTTTATCTTTATGTATCATGC 712
|||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 641 ACGGCGCTTGGTGTTCCTTCTTCGGCACGGTAGCATTCTCTCTATCTTTATGTATCATGC 700
Query 713 AATTAGGGTTCCAAAAGGTCATACCGACTACACAGAGTAGAGTTTCCGCGGTGATTCTAA 772
||||||| ||||||||||||||||| |||||| |||||||||||||||||||||| || |
Sbjct 701 AATTAGGATTCCAAAAGGTCATACCAACTACAGAGAGTAGAGTTTCCGCGGTGATGCTGA 760
Query 773 TGCAAACCAATGCTTCTATGATTGCAACGTTGATATGTTTGGTTGGATTATTCGTTAGTG 832
|||||||||||||||| ||||||||||| |||||||||||||| || |||||||| || |
Sbjct 761 TGCAAACCAATGCTTCAATGATTGCAACATTGATATGTTTGGTAGGGTTATTCGTAAGCG 820
Query 833 GTGAATTCAAAGATATAAAAGAAGATTTTGAGACGTTTAAGAAGGGGAAGCCACTTTATG 892
|||||||||||||||| || |||||||| || ||||||||||||||||||| ||||||||
Sbjct 821 GTGAATTCAAAGATATCAAGGAAGATTTGGAAACGTTTAAGAAGGGGAAGCAACTTTATG 880
Query 893 TCTT-GAGTCTAATTGGATTATCGCTTGCGTGGCAAGTAATGTCTTTAGGGCTTGTGGGG 951
| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 881 T-TTGGAGTCTAATTGGATTATCACTTGCGTGGCAAGTAATGTCTTTAGGGCTTGTGGGG 939
Query 952 CTAGTGTGTTTGGCTTCTTCTCTTTTCTCTAATGTTGTCAGCTTCTGCTCAACGCCATTA 1011
|| ||||||||||||||||||||||||||||||||||||||||||||| ||| || |||
Sbjct 940 CTTGTGTGTTTGGCTTCTTCTCTTTTCTCTAATGTTGTCAGCTTCTGCGCAATACCTTTA 999
Query 1012 GTAAACATTCTCCTTGTGTTGGCGTTTCGGTTTACGGATGCCGACGTTAAATTTTTTAAG 1071
| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1000 GCGAACATTCTCCTTGTGTTGGCGTTTCGGTTTATGGATGCCGACGTTAAATATTTTAAG 1059
Query 1072 GAAGGAGCTCTGGTAGCTGGGATTCTTGGTTTTGCATCTTATGTGTATTCCTTGTATAAG 1131
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1060 GAAGGAGCTCTGGTAGCTGGGATTCTTGGTTTTGCATCTTATGTATATTCCTTGTATAAG 1119
Query 1132 TCTACCAAGAAAAAGGAAATAGCAAGCCAAAGCCAAACAACTAGAGTATGA 1182
||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1120 TCTACCAAGAAAAAGGAAATAGCAAGCCAAAGCGAAACAACTAGAGTATGA 1170
> Ahg913766 jgi|Araly1|913766|Al_scaffold_0001_4020
Length=1173
Score = 1312 bits (710), Expect = 0.0
Identities = 1023/1172 (87%), Gaps = 29/1172 (2%)
Strand=Plus/Plus
Query 1 ATGGGTTTCCACA-CAAAATCGCCGGACCGAGTAACTCATGAAGAAGAAGAAGCAAATAT 59
|||||||| |||| | |||| ||||||||| ||| || ||||||||||||| |||||
Sbjct 1 ATGGGTTTACACATC-GAATCTCCGGACCGAATAA--CA-CAAGAAGAAGAAGCTAATAT 56
Query 60 AGGAGTTGATAATCAACCAAGAGAAACGACATCAACATCTCTTAATAGGTCACAAATTAT 119
|||||||| ||||||||||||| ||| || |||| | ||||| || ||||||||| | |
Sbjct 57 TGGAGTTGAGAATCAACCAAGAGCAACAACTTCAATAGCTCTTGATCGGTCACAAAATCT 116
Query 120 TAAGACAAGAAACTGGTGGATTTGTATCTTTGTCTGCTCGTG-TTTGGTCGTAGCAGGAC 178
||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||
Sbjct 117 TAAGACAAGAAACTGGTGGATTTGTATCTTTGTCTGCTC-TGGTTTGGTCGTAACAGGAC 175
Query 179 GTGTTTTATCCACCCTTCTTTTAAACTTCTACTTCATCCAAACAGGACGAGATGTTTGTG 238
|||||||||| || |||||| |||||||||| |||| |||||||||| |||||| |||||
Sbjct 176 GTGTTTTATCAACACTTCTTCTAAACTTCTATTTCAACCAAACAGGAAGAGATGCTTGTG 235
Query 239 ATGACCCAAAGCAATTTAAAGGCACATGGCTCCAGTCTATGGTCCAAAACGCTGCGTTTC 298
| || ||||| |||||||||||||||||||| || ||| | |||||||||||||||||||
Sbjct 236 ACGATCCAAAACAATTTAAAGGCACATGGCTTCAATCTTTTGTCCAAAACGCTGCGTTTC 295
Query 299 CTTTTACAGCctttc-ttcttc-tcttatggcgttcttcattttccacccatagtgaaac 356
| | || |||||| | || ||| ||||||||||||||||||| ||||| ||||| |||||
Sbjct 296 CATCTATAGCCTT-CATT-TTCCTCTTATGGCGTTCTTCATTCTCCACTCATAGAGAAAC 353
Query 357 ttcc-tcttcttcttcttcttttggcaaactctttcttctttacatctctctcGGCGTCC 415
| | ||||| ||||||| |||||||||||||||| |||||||| |||||||||| |||
Sbjct 354 T-CAATCTTCGTCTTCTTTTTTTGGCAAACTCTTTATTCTTTACCTCTCTCTCGGTTTCC 412
Query 416 TATTTGCGGCTTATAGCCAACTCTATGCAATTGGGCGAACGCATTGTGTGTTCTTCTTGT 475
| | ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
Sbjct 413 TCTCTGCGGCTTATAGCCAACTCTATGCAATTGGGAGAACTCATTGTGTGTTCTTCTTTT 472
Query 476 GGATCTTTACTTCCCAATTGATTTTCACTTCCATATTTACAACAATTATCAACAAACAAA 535
||||||| || | ||| |||| ||||||||||| |||||| |||||||||||||||| |
Sbjct 473 GGATCTTCACAACACAACTGATCTTCACTTCCATCTTTACAGCAATTATCAACAAACACA 532
Query 536 AATTCAACCGTTGGATCATATTATCCATGGTCCTTTCTGGAGCTGCCACAGGCTTAGGCA 595
|||||||||||||||||||||||||||| ||||||||||||| |||||| || | ||
Sbjct 533 AATTCAACCGTTGGATCATATTATCCATCGTCCTTTCTGGAGTTGCCAC-GG----G-CA 586
Query 596 TTACATCTTCAGG-TGGCGCCTAT-ATTCCCTGCGAAAATGAAGGCTCAAAAATGAG-TA 652
|||||||||| || || ||||||| || |||||||||| |||||||| |||||||| ||
Sbjct 587 TTACATCTTC-GGATGACGCCTATTAT-CCCTGCGAAAGTGAAGGCTGGAAAATGAGCTA 644
Query 653 ACGGCGCTTGGTGTGCCTTCTTTGGCACGGTAGCATTCTCTTTATCTTTATGTATCATGC 712
||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 645 -CGGTGCTTGGTGTGCCTTCTTTGGCACGGTAGCCTTCTCTTTATCTCTATGTATCATGC 703
Query 713 AATTAGGGTTCCAAAAGGTCATACCGA-CTACACAGAGTAGAGTTTCCGCGGTGAT-TCT 770
|||| |||||||||||||||||||| | | ||| |||||||||||||| ||||||| | |
Sbjct 704 AATTGGGGTTCCAAAAGGTCATACCTAAC-ACAGAGAGTAGAGTTTCCACGGTGATGT-T 761
Query 771 AATGCAAACCAATGCTTCTATGATTGCAACGTTGATATGTTTGGTTGGATTATTCGTTAG 830
||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct 762 GATGCAAACCAATGCTTCTATGATTGCAACATTGATATGTTTGGTTGGATTATTCATAAG 821
Query 831 TGGTGAATTCAAAGATATAAAAGAAGATTTTGAGACGTTTAAGAAGGGGAAGCCACTTTA 890
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 822 CAGTGAATACAAAGATATAAAAGAAGATTTCGAGACGTTTAAGAAGGGGAAGCCACTTTA 881
Query 891 TGTCTTGAGTCTAATTGGATTATCGCTTGCGTGGCAAGTAATGTCTTTAGGGCTTGTGGG 950
|| |||||||| || |||||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct 882 CGTTTTGAGTCTCATCGGATTATCACTTGCATGGCATGTAATGTCTTTAGGACTTGTGGG 941
Query 951 GCTAGTGTGTTTGGCTTCTTCTCTTTTCTCTAATGTTGTCAGCTTCTGCTCAACGCCATT 1010
|| |||||||||||||||||| |||||||||||||||||| ||||| | | || || ||
Sbjct 942 TCTTGTGTGTTTGGCTTCTTCTATTTTCTCTAATGTTGTCAACTTCTCCGCCACACCTTT 1001
Query 1011 AGTAAACATTCTCCTTGTGTTGGCGTTTCGGTTTACGGATGCCGACGTTAAATTTTTTAA 1070
|| |||||| | |||| |||||||||||||||| ||||| |||| || ||| |||||
Sbjct 1002 AGCGAACATTTTTGTTGTTTTGGCGTTTCGGTTTATGGATGACGACATTGAATGGTTTAA 1061
Query 1071 GGAAGGAGCTCTGGTAGCTGGGATTCTTGGTTTTGCATCTTATGTGTATTCCTTGTATAA 1130
|| |||||||||| |||||||||| ||||| ||||||||||||| ||||||||||| ||
Sbjct 1062 GGGAGGAGCTCTGTTAGCTGGGATCCTTGGGCTTGCATCTTATGTATATTCCTTGTACAA 1121
Query 1131 GTCTACCAAGAAAAAGGAAATAGCAAGCCAAA 1162
| ||| |||||| ||||||||||||||||||
Sbjct 1122 GGCTATTAAGAAACAGGAAATAGCAAGCCAAA 1153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44108214969
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5