BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47620.1
Length=1761
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923071 jgi|Araly1|923071|scaffold_104352.1 2274 0.0
Ahg923070 jgi|Araly1|923070|scaffold_104351.1 2150 0.0
Ahg952035 jgi|Araly1|952035|scaffold_31100001.1 520 2e-146
Ahg331566 jgi|Araly1|331566|fgenesh1_pm.C_scaffold_8000909 481 9e-135
> Ahg923071 jgi|Araly1|923071|scaffold_104352.1
Length=1607
Score = 2274 bits (1231), Expect = 0.0
Identities = 1480/1600 (93%), Gaps = 18/1600 (1%)
Strand=Plus/Plus
Query 16 ATCTCTCTAATGGCTTCAATAGGGCTATATGAAGCATTCATAGGTTTCCTCTGCTTTCTC 75
|||| ||||||||||||||||||| ||| |||||||||||||| ||| || |||||||||
Sbjct 12 ATCTATCTAATGGCTTCAATAGGGTTATTTGAAGCATTCATAGCTTTACTTTGCTTTCTC 71
Query 76 AT-TTCCTTTTACTTCCTTGTCAAGAAACCTTTCAGTTACTTACTCATCAAGAAAACTCT 134
|| || || ||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 72 ATCTT-CTATTACTTCCTTGTCAAGAAACCTTTCAGTTACTTACCCATCAAGAAAACCCT 130
Query 135 TCAAAGCTACCCTTGGAACTGGCCGGTTCTTGGAATGCTTCCCGGTGTTCTCTTGAGGCT 194
| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 131 TGAAAGCTACCCTTGGAACTGGCCAGTTCTTGGAATGCTTCCCGGTGTGCTCTTGAGGCT 190
Query 195 CCAGCGCATCTATGACTGCAGCGTCGAGGTGCTCGAAAATTCCAACATGACGTTTCAATT 254
||||||||||||||| |||||||||||| | ||||| || |||||| |||||||||||||
Sbjct 191 CCAGCGCATCTATGATTGCAGCGTCGAGATTCTCGAGAACTCCAACTTGACGTTTCAATT 250
Query 255 CAAAGGCCCATGGTTCGTTGGAATGGATGTATTAGCCACGGTTGATCCAGCTAATATTCA 314
||| |||||||||||||||||||||| | |||||||||| ||||||||||||||||||||
Sbjct 251 CAAGGGCCCATGGTTCGTTGGAATGGGTATATTAGCCACAGTTGATCCAGCTAATATTCA 310
Query 315 TCATATAATGAGCTCAAACTTCTCAAATTACATCAAAGGTCCTATATTCCACGAAATTTT 374
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 311 TCATATAATGAGCTCAAACTTCTCAAATTACATCAAAGGTCCTATTTTCCACGAAATTTT 370
Query 375 TGAAGCTTTTGGAGATGGGATCATTAATACGGACGCGGAGCTATGGAGGGATTGGAGGAA 434
||||||||||||||| |||||||||||| | ||| |||||||||||||||||||||||||
Sbjct 371 TGAAGCTTTTGGAGACGGGATCATTAATTCCGACTCGGAGCTATGGAGGGATTGGAGGAA 430
Query 435 CGCATCTCAGCTTATATTCAATCATCAAAGGTACCAAAACTTCTCAGCAAGTACCACGAA 494
||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 431 CGCGTCTCAGATTATATTCAATCATCAAAGGTACCAAAACTTCTCAGCAAGTACAACGAA 490
Query 495 AACTAAAG-TCAATGATGGGCTTGTACCTCTTTTCAATCACTTTGCAAATGAAGAGATTG 553
|| ||| | |||| |||||||||||||||||||||| |||||||||| | |||||||| |
Sbjct 491 AAGTAA-GCTCAAGGATGGGCTTGTACCTCTTTTCAGTCACTTTGCAGACGAAGAGATGG 549
Query 554 TTGTGGACTTGGAAGATGTGTTCCAGAGATTCATGTAT-GATATAACCTTCATTTTCATA 612
||||||||||| ||||||| |||||||||||||||| | |||||||||||||||||||||
Sbjct 550 TTGTGGACTTGCAAGATGTATTCCAGAGATTCATGT-TCGATATAACCTTCATTTTCATA 608
Query 613 ACCGGGACCGATCCTAGAAGTCTCTCCATTGAAATGCCAGAGGTCGAATTTTCCAAAGCT 672
|||||| ||||||||||||||||||||||||||||| ||||||| || ||| ||||||||
Sbjct 609 ACCGGGTCCGATCCTAGAAGTCTCTCCATTGAAATGTCAGAGGTTGAGTTTGCCAAAGCT 668
Query 673 CTTGACGATGTTGGAGATGCGATTGTGCATAGGCATATTACACCGAGGTTCGTGTGGAAG 732
||||| ||||| |||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 669 CTTGATGATGTGGGAGATGCGATTGTGCATAGGCATATTACACCAAGGTTCATGTGGAAG 728
Query 733 TTACAAAAATGGATTGGAATCGGAACAGAGAAGAAGATGTTGAAAGCTCATGCCACTTTT 792
|||||||||||||||| |||||||||||||||||||| || ||||| |||||||||||
Sbjct 729 CTACAAAAATGGATTGGTGTCGGAACAGAGAAGAAGATGATGGAAGCTAATGCCACTTTT 788
Query 793 GACCGTGTTTGTGAAAAAATAATAGCAGCAAAGAGAGAAGAGCTAGGATCACAAGGGATT 852
|| ||||||||||||||| | |||||||| |||| |||||| ||| | ||||||| ||||
Sbjct 789 GATCGTGTTTGTGAAAAACTTATAGCAGCGAAGAAAGAAGAACTAAGTTCACAAGTGATT 848
Query 853 ACAT-ACAACT-CTAATGGAGAAAGGGAGGATCTTTTAACATCCTTCATAAAGCTTGATG 910
|| | |||| | | ||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 849 AC-TCACAA-TACCAATGGAGAAAGTGAGGATCTTTTGACATCCTTCATAAAGCTTGATG 906
Query 911 CAACCAAGTACGAGGTTTTGAAACC-TAGTCATGATAAGTTCCTCAGGGACTTCACAATA 969
|||| ||||| ||| |||| ||||| |||| |||||||||||||||| ||||||||||||
Sbjct 907 CAACTAAGTATGAGCTTTT-AAACCCTAGTGATGATAAGTTCCTCAGAGACTTCACAATA 965
Query 970 GGTTTCATGGCAGCTGGGAGAGATTCCACGGCCTCTACACTCACTTGGTTCTTTTGGAAT 1029
||||||||||| ||||| |||||||||||||||||| |||||||||||||||| ||||||
Sbjct 966 GGTTTCATGGCCGCTGGAAGAGATTCCACGGCCTCTGCACTCACTTGGTTCTTCTGGAAT 1025
Query 1030 TTATCTAAAAACCCTAACGTCTTAACCAAGATTCTCCAAGAGATCAACACAAATCTACCA 1089
|| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1026 TTGTCTGAAAACCCTAACGTCTTAACCAAGATTCTCCAAGAGATCAACACATATCTACCA 1085
Query 1090 AGAACCGGAAGTGA---CCAAGACATGTCATCGTACTTGAACAAGTTGGTGTACTTACAT 1146
|||||||||||||| |||||||| |||||||||||||||||| ||| |||||||||||
Sbjct 1086 AGAACCGGAAGTGATGACCAAGACAAGTCATCGTACTTGAACAAATTGTTGTACTTACAT 1145
Query 1147 GGTGCATTGAGTGAATCAATGAGGCTTTACCCACCAATACCATTCCAACGCAAGTCTCCA 1206
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1146 GGTGCATTGAGTGAATCAATGAGGCTTTACCCACCAATTCCATTCGAACGCAAGTCTCCA 1205
Query 1207 ATCAAAGAAGATGTGCTTCCAAGTGGACATAAAGTCAAATCAAATATCAATATTATGATC 1266
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1206 ATCAAAGAAGATGTGCTTCCAAGTGGACACAAAGTCAAATCAAATATCAATATTATGATC 1265
Query 1267 TTTATCTACGCCATGGGGA-GAATGAAAACCATATGGGGAGAAGACGCAATGGAGTTCAA 1325
|||||||||| ||||| | ||||||||||| |||||||||||||||| |||||||||||
Sbjct 1266 CTTATCTACGCTATGGG-ACGAATGAAAACCGTATGGGGAGAAGACGCGATGGAGTTCAA 1324
Query 1326 GCCAGAGAGATGGATTTCAGAGACAGGAGGGGTGAGACATGAGCCTTCTTACAAGTTCTT 1385
||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1325 GCCCGAGAGATGGATTTCAGAGACAGGAGCGTTGAGACATGAGCCTTCTTACAAGTTCTT 1384
Query 1386 ATCCTTCAATGCCGGCCCAAGAACTTGTCTCGGTAAGAATTTAGCTATGAATTTGATGAA 1445
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1385 ATCCTTCAATGCCGGCCCAAGAACATGTCTCGGTAAGAATTTAGCTATGAATTTGATGAA 1444
Query 1446 GACGGTGATCGTGGAGATATTACAAAACTATGAGATTAAGATTGTCAGTGGACAAAAGAT 1505
||| ||| ||||||| ||| |||||| ||||||||||||| |||||||||||||||||||
Sbjct 1445 GACCGTGGTCGTGGAAATACTACAAATCTATGAGATTAAGGTTGTCAGTGGACAAAAGAT 1504
Query 1506 TGAGCCAAAACCTGGTCTCATTCTTCACATGAAGCATGGACTTAAAGTCACAATGACTAA 1565
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1505 TGAGCCAAAACCTGGTCTCATTCTTCACATGAAGTATGGGCTTAAAGTCACAATGACTAA 1564
Query 1566 GAAATGTTCCAGCTTGGAGTGAAAATGCTCAAGGTGCTTT 1605
||||||||||||||| |||||||| |||||||| || |||
Sbjct 1565 GAAATGTTCCAGCTTTGAGTGAAA-TGCTCAAGTTGTTTT 1603
> Ahg923070 jgi|Araly1|923070|scaffold_104351.1
Length=1607
Score = 2150 bits (1164), Expect = 0.0
Identities = 1462/1604 (91%), Gaps = 27/1604 (2%)
Strand=Plus/Plus
Query 16 ATCTCTCTAATGGCTTCAATAGGGCTATATGAAGCATTCATAGGTTTCCTCTGCTTTCTC 75
|||| ||||||| ||||||||||| ||| |||||||||||||| | | || |||||||||
Sbjct 13 ATCTATCTAATGACTTCAATAGGGTTATTTGAAGCATTCATAGCTCTACTTTGCTTTCTC 72
Query 76 AT-TTCCTTTTACTTCCTTGTCAAGAAACCTTTCAGTTACTTACTCATCAAGAAAACTCT 134
|| || |||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 73 ATCTT-CTTTTACTTCCTTGTCAAGAAACCTTTCAGTTACTTACCCATCAAGAAAACCCT 131
Query 135 TCAAAGCTACCCTTGGAACTGGCCGGTTCTTGGAATGCTTCCCGGTGTTCTCTTGAGGCT 194
| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 132 TGGAAGCTGCCCTTGGAACTGGCCGGTTCTTGGAATGCTTCCCGGTGGGCTCTTGAGGCT 191
Query 195 CCAGCGCATCTATGACTGCAGCGTCGAGGTGCTCGAAAATTCCAACATGACGTTTCAATT 254
||||||||||||||||| ||| |||||||| || || || |||||| |||||||||||||
Sbjct 192 CCAGCGCATCTATGACTACAGTGTCGAGGTTCTTGAGAACTCCAACTTGACGTTTCAATT 251
Query 255 CAAAGGCCCATGGTTCGTTGGAATGGATGTATTAGCCACGGTTGATCCAGCTAATATTCA 314
||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 252 CAAGGGTCCATGGTTCGTTGGAATGGATGTATTAGCCACAGTTGATCCAGCTAATATTCA 311
Query 315 TCATATAATGAGCTCAAACTTCTCAAATTACATCAAAGGTCCTATATTCCACGAAATT-T 373
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
Sbjct 312 TCATATAATGAGCTCAAACTTCTCAAATTACATCAAAGGTCCTATTTTCCACGAA-TTAT 370
Query 374 TTGAAGCTTTTGGAGA-TGGGATCATTAA-TACGGACGCGGAGCTATGGAGGGATTGGAG 431
||||||||| ||||| ||| ||||| || | ||||| | |||||||||||| |||||||
Sbjct 371 TTGAAGCTTACGGAGACTGG-ATCATCAACT-CGGACTCTGAGCTATGGAGGAATTGGAG 428
Query 432 GAACGCATCTCAGCTTATATTCAATCATCAAAGGTACCAAAACTTCTCAGCAAGTACCAC 491
||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 429 GAACGCATCTCAGATCATATTGAATCATCAAAGGTACCAAAACTTCTCAGCAAGTACCAC 488
Query 492 GAAAACTAAAG-TCAATGATGGGCTTGTACCTCTTTTCAATCACTTTGCAAATGAAGAGA 550
||| | ||| | |||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 489 GAAGAGTAA-GCTCAAGGATGGGCTTGTACCTCTTTTCAATCACTTTGCAGATGAAGAGA 547
Query 551 TTGTTGTGGACTTGGAAGATGTGTTCCAGAGATTCATGTAT-GATATAACCTTCATT-TT 608
| |||||||||||| |||||||||| ||||||||||||| | ||||||||||| || ||
Sbjct 548 TGGTTGTGGACTTGCAAGATGTGTTTCAGAGATTCATGT-TCGATATAACCTTTGTTATT 606
Query 609 CATAACCGGGACCGATCCTAGAAGTCTCTCCATTGAAATGCCAGAGGTCGAATTTTCCAA 668
||||| ||| | |||||||||| |||||||||||||||||||||||| || ||| ||||
Sbjct 607 -ATAACAGGGTCTGATCCTAGAAATCTCTCCATTGAAATGCCAGAGGTTGAGTTTGCCAA 665
Query 669 AGCTCTTGACGATGTTGGAGATGCGATTGTGCATAGGCATATTACACCGAGGTTCGTGTG 728
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 666 AGCTCTTGATGATGTGGGAGATGCGATTGTGCATAGGCATATTACACCAAGGTTCGTGTG 725
Query 729 GAAGTTACAAAAATGGATTGGAATCGGAACAGAGAAGAAGATGTTGAAAGCTCATGCCAC 788
|||| |||||||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 726 GAAGCTACAAAAATGGATTGGTGTCGGAACAGAGAAGAAGATGATGGAAGCTCATGCCAC 785
Query 789 TTTTGACCGTGTTTGTGAAAAAATAATAGCAGCAAAGAGAGAAGAGCTAGGATCACAAGG 848
| |||| ||||||||||||||| | |||||||| |||| |||||| ||| | |||||||
Sbjct 786 TCTTGATCGTGTTTGTGAAAAACTTATAGCAGCGAAGAAAGAAGAACTAAGTTCACAAGT 845
Query 849 GATTACAT-ACAACT-CTAATGGAGAAAGGGAGGATCTTTTAACATCCTTCATAAAGCTT 906
|||||| | |||| | | ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 846 GATTAC-TCACAA-TACCAATGGAGAAAGTGAGGATCTTTTGACATCCTTCATAAAGCTT 903
Query 907 GATGCAACCAAGTACGAGGTTTTGAAACC-TAGTCATGATAAGTTCCTCAGGGACTTCAC 965
|||||||| ||||| ||| |||| ||||| |||| |||||||||||||||| ||||||||
Sbjct 904 GATGCAACTAAGTATGAGCTTTT-AAACCCTAGTGATGATAAGTTCCTCAGAGACTTCAC 962
Query 966 AATAGGTTTCATGGCAGCTGGGAGAGATTCCACGGCCTCTACACTCACTTGGTTCTTTTG 1025
||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||| ||
Sbjct 963 AATAGGTTTCATGGCCGCTGGAAGAGATTCCACGGCCTCTGCACTCACTTGGTTCTTCTG 1022
Query 1026 GAATTTATCTAAAAACCCTAACGTCTTAACCAAGATTCTCCAAGAGATCAACACAAATCT 1085
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1023 GAATTTGTCTGAAAACCCTAACGTCTTAACCAAGATTCTCCAAGAGATCAACACATATCT 1082
Query 1086 ACCAAGAACCGGAAGTGA---CCAAGACATGTCATCGTACTTGAACAAGTTGGTGTACTT 1142
|||||||||||||||||| |||||||| |||||||||||||||||| ||| |||||||
Sbjct 1083 ACCAAGAACCGGAAGTGATGACCAAGACAAGTCATCGTACTTGAACAAATTGTTGTACTT 1142
Query 1143 ACATGGTGCATTGAGTGAATCAATGAGGCTTTACCCACCAATACCATTCCAACGCAAGTC 1202
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1143 ACATGGTGCATTGAGTGAATCAATGAGGCTTTACCCACCAATTCCATTCGAACGCAAGTC 1202
Query 1203 TCCAATCAAAGAAGATGTGCTTCCAAGTGGACATAAAGTCAAATCAAATATCAATATTAT 1262
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1203 TCCAATCAAAGAAGATGTGCTTCCAAGTGGACACAAAGTCAAATCAAATATCAATATTAT 1262
Query 1263 GATCTTTATCTACGCCATGGGGA-GAATGAAAACCATATGGGGAGAAGACGCAATGGAGT 1321
|||| |||||||||| ||||| | ||||||||||| |||||||||||||||| |||||||
Sbjct 1263 GATCCTTATCTACGCTATGGG-ACGAATGAAAACCGTATGGGGAGAAGACGCGATGGAGT 1321
Query 1322 TCAAGCCAGAGAGATGGATTTCAGAGACAGGAGGGGTGAGACATGAGCCTTCTTACAAGT 1381
||||||| |||||||||||||||||||||||| || |||||||||||||||||||||| |
Sbjct 1322 TCAAGCCCGAGAGATGGATTTCAGAGACAGGAAGGTTGAGACATGAGCCTTCTTACAAAT 1381
Query 1382 TCTTATCCTTCAATGCCGGCCCAAGAACTTGTCTCGGTAAGAATTTAGCTATGAATTTGA 1441
||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1382 TCTTATCGTTCAATGCAGGCCCAAGAACATGTCTCGGTAAGAATTTAGCTATGAATTTGA 1441
Query 1442 TGAAGACGGTGATCGTGGAGATATTACAAAACTATGAGATTAAGATTGTCAGTGGACAAA 1501
||||||| ||| ||||||| |||||||||||||||||||||||| | |||||||||||||
Sbjct 1442 TGAAGACCGTGGTCGTGGAAATATTACAAAACTATGAGATTAAGGTCGTCAGTGGACAAA 1501
Query 1502 AGATTGAGCCAAAACCTGGTCTCATTCTTCACATGAAGCATGGACTTAAAGTCACAATGA 1561
|||||||||||||| ||||| |||||||||||||||| |||| | ||||||||||||||
Sbjct 1502 AGATTGAGCCAAAAGTTGGTCACATTCTTCACATGAAGTATGGGCGTAAAGTCACAATGA 1561
Query 1562 CTAAGAAATGTTCCAGCTTGGAGTGAAAATGCTCAAGGTGCTTT 1605
||||||||||||||||||| |||||||| | || ||| ||||||
Sbjct 1562 CTAAGAAATGTTCCAGCTTTGAGTGAAATT-CT-AAGTTGCTTT 1603
> Ahg952035 jgi|Araly1|952035|scaffold_31100001.1
Length=1591
Score = 520 bits (281), Expect = 2e-146
Identities = 1107/1490 (74%), Gaps = 120/1490 (8%)
Strand=Plus/Plus
Query 151 AACTGGCCGGTTCTT-GGAATGCTTCCCGGTGTTCTCTTGAG-GCTCCAGCGCATCTATG 208
|||||||||| | || || ||| |||| ||| || ||||| | |||||| || ||||| |
Sbjct 128 AACTGGCCGG-TGTTGGGGATGATTCCGGGTCTTTTCTTG-GTGCTCCACCGTATCTACG 185
Query 209 ACTGCAGC-GTCGAGGTGCTCGAAAATTCCAACATGACGTTTCAATTCAAAGGCCCATGG 267
||| || | || ||| | || ||||| || | | || |||| |||||| || || |||
Sbjct 186 ACTTCA-CTGTGGAGCTTCTTGAAAACACCGAGTTAACATTTCCATTCAAGGGACCGTGG 244
Query 268 TTCGTTGGAATGGATGTATTAGC-CACGGTTGATCCAGCTAATATTCATCATA--TAATG 324
|||| |||||||||| | | || ||| | |||||||||||||||| | | || || |
Sbjct 245 TTCGCTGGAATGGATATGCT-GCTCACAGCTGATCCAGCTAATATTTA-C-TACCTAGTA 301
Query 325 AGCTCAAACTTCTCAAATTACATCAAAGG-TCCTATA-TTCCACGAAATTTTTGAAGCTT 382
| |||||||||||| |||| | ||||| ||| | | ||| | || || ||||| || |
Sbjct 302 AACTCAAACTTCTCCAATTTTGTTAAAGGTTCC-A-ACTTCAAAGAGATCTTTGATGCCT 359
Query 383 TTGGAGATGGGATCA-TTA-ATACGGACGCG--GAGCTATGGAGGGAT-TGGAGGAACGC 437
| | |||| | | | | | | | |||| || | || ||||| | || | |||||| ||
Sbjct 360 TCGAAGAT-GCTTTACTCACA-AAGGACTCGTTG-GC-ATGGAAGAATCT-GAGGAAAGC 414
Query 438 ATCTCA-GCTTAT-ATTCAATCATCAAAGGTACCAAA-ACTTCTCAGCAAGTACCACGAA 494
||||| || || | |||| |||||| ||| |||| | || ||| | ||||||||
Sbjct 415 TTCTCAGGC-CATGA-TCAACCATCAAGGGTTTCAAAGA-TTGTCATTGACTACCACGAG 471
Query 495 AACTAAAGTCAATGATGGGCTTGTACCTCTTTTCAATCACT-TTGCAAATGAAGAG-ATT 552
|| |||||| || || |||||||| || ||||||||||| | | || |||| | |
Sbjct 472 AAGTAAAGTTAAGGACGGGCTTGTTCCACTTTTCAATCA-TATCGCTCGGGAAG-GCACA 529
Query 553 GTTGTGGACTTGGAAGATGTGTTCCAGAGATTCATGTAT-GATATAACCTTC-ATTTTCA 610
||| || ||| ||||||||||| ||| |||| || | |||| || | || | || ||
Sbjct 530 ACTGTAGATTTGCAAGATGTGTTCTGGAGGTTCACGT-TCGATACAA-C-TCTAGTTACA 586
Query 611 -TAACC--G-G-GACCGATCCTAGAAGTCTCTCCATTGAAATGCCAG-AGGTCGAATTTT 664
||||| | | || ||||||||| |||||||||||||||||||| | | || |
Sbjct 587 GTAACCGGGTGTGA-TGATCCTAGATCTCTCTCCATTGAAATGCCAGTA-ATTGAGTCCG 644
Query 665 CCAAAGCTCTTGACGA-TGTTGGAGATGCGATTGTGCATAGGCATATTACACCGAGGTTC 723
| |||||||| ||| | | ||| ||| | ||| || |||||||| ||| ||| || |||
Sbjct 645 CTAAAGCTCTGGAC-ACTATTGTAGAAGGGATCGTTTATAGGCATGTTAAACCTAGATTC 703
Query 724 GTGTGGAAGTTACAAAAATGGATTGGAATCGGAACAGAGAAGAAGATG-TTGAAAGCTCA 782
|||||||| |||||| ||| | ||| |||| | ||||||||||||| | | |||||
Sbjct 704 TTGTGGAAGCTACAAAGCTGGGTCGGAGTCGGGATAGAGAAGAAGATGATAG-AAGCTGG 762
Query 783 TGCCACTTTTGACCGTGTTTGTGAAAAAATA-ATAGCAGCAAAGAGAGAAGAG-CT--AG 838
||||| |||||| || || |||| ||||| ||| |||| | |||||||||| | |
Sbjct 763 TGCCATTTTTGATCGAGTGTGTG-CGAAATACATATCAGCCAGGAGAGAAGAGATTAAAA 821
Query 839 GATCACAAGGGATTACATACAACTCTAATGGAGAAAGGGAGGATCTTTTAACATCCT-TC 897
|||||||||||| | | || |||||||||||| || ||||||| |||| || |
Sbjct 822 GATCACAAGGGA-T---T--AA---TAATGGAGAAAGTGAACATCTTTTGACAT-CTCAC 871
Query 898 ATAAAGCTTGATGCAACCAAGTACGAGGTTTTGAAACCTAGTC-ATGATAAGTTCCTCAG 956
|||||||||||| ||||||||||| || | || | |||| || |||||||||||||| |
Sbjct 872 ATAAAGCTTGATACAACCAAGTACCAGCTCATGGATCCTA-TCAATGATAAGTTCCTCCG 930
Query 957 GGAC-TTCACAATAGGTTTCA-TGGC-AGCTGGGAGAGATTCCACGGCCTCTACACTCAC 1013
||| | | | | ||| | | | ||||||||||||| |||| |||||| | |||||
Sbjct 931 AGACAATGTC-TTTGCTTT-ACT-TCTAGCTGGGAGAGATACCACTGCCTCTGCTCTCAC 987
Query 1014 TTGGTTCTTTTGGAATTTATCTAAAAACCCT-AACGTCTTAACCAAGATTCTCCAAGAGA 1072
||||||||| | | ||| || |||||||| | || | || | ||||| ||||||||
Sbjct 988 TTGGTTCTTCTCGTTTTTGTCCGAAAACCCTCTA-GTGGTGACTAGGATTCGCCAAGAGA 1046
Query 1073 TCAACACAAATCTACCAAGAACCGGAAGTGACCA--AGA---CA-----TG-T-C-AT-- 1117
| |||| | ||||||||||| | |||| ||| ||| || || | | ||
Sbjct 1047 TTGACACGATTCTACCAAGAAGTAGTAGTGGCCACGAGAGGCCATCTTGTGATGCAATGG 1106
Query 1118 CGTACTTGAACAAGTTGGTGTACTTACATGG-TGCATTGAGTGAATCAATGAGGCTTTAC 1176
|||||| |||||||| ||||| ||||| || |||||| ||||| |||||||||||| |
Sbjct 1107 AGTACTTAAACAAGTTAGTGTATTTACA-GGCCGCATTGTGTGAAACAATGAGGCTTTGC 1165
Query 1177 CCACCAATACCAT-TCCAACGCAAGTCTCCAATCA-AAGAAGATGTGCTTCCAAGTGGAC 1234
||||| | || | || | || |||||| | | || ||||||||||||||||||||
Sbjct 1166 CCACCGGTTCC-TCTCGAGCGTTTGTCTCCTGT-AGAATCAGATGTGCTTCCAAGTGGAC 1223
Query 1235 ATAAAGTCAAATCAAATATCAA-TATTATGATCTTTATCTACGCCATGGGGAGAATGAAA 1293
|||||||| || |||| |||| |||| || ||||||| || | |||| || |||| |
Sbjct 1224 ATAAAGTCGAAGCAAAC-TCAAATATTTTGGTCTTTATTTATGGGGTGGGTAGGATGAGA 1282
Query 1294 ACCATATGGGGAGAAGACGCAATG-GAGTTCAAGCCAGAGAGATGGATTTCAGAGACAGG 1352
| ||||||||||||| ||| | || ||||||||||||||||||||||| ||||| ||
Sbjct 1283 GCTGTATGGGGAGAAGATGCA-TCAGAATTCAAGCCAGAGAGATGGATTTCCGAGACCGG 1341
Query 1353 AGGGGTGAGACATG-AGCCTTC-TTACAAGTTCTTATCCTTCAATGCCGGCCCAAGAACT 1410
|| | ||||||||| | ||| | || |||||||||| | ||||||||||||||||||| |
Sbjct 1342 AGAGTTGAGACATGTA-CCTGCCTT-CAAGTTCTTAGCATTCAATGCCGGCCCAAGAA-T 1398
Query 1411 -TGTCTCGGTAAG-AATTTAGCTATGAATTTGA-TGAAGACGGTGATCGTGGAGATATTA 1467
|| |||||||| || | |||||||| || | |||||| ||| |||||||||||||
Sbjct 1399 ATGCCTCGGTAAACAAAT-AGCTATGA-TTCAAATGAAGATTGTGGCCGTGGAGATATTA 1456
Query 1468 CAAAACTATGAGATTAAGATTGTCAGTGGACAAAAGATTGAGCCAAA-ACCTGGTCTCAT 1526
||||||||||| |||||| ||| || || || ||| |||| ||| | || | || | ||
Sbjct 1457 CAAAACTATGACATTAAGGTTGCCAAAGGGCAGAAGTTTGAACCAGATAC-TAGTTTAAT 1515
Query 1527 TCTTCACA-TGAAGCATGGACTTAAAGTCACAATGA-CTAAGAAATGTTC 1574
|||| | | |||||||||| |||| || || || | | |||| ||||||
Sbjct 1516 TCTT-AGAATGAAGCATGGGTTTAAGGTTACGATTAAC-AAGAGATGTTC 1563
> Ahg331566 jgi|Araly1|331566|fgenesh1_pm.C_scaffold_8000909
Length=1482
Score = 481 bits (260), Expect = 9e-135
Identities = 1034/1392 (74%), Gaps = 116/1392 (8%)
Strand=Plus/Plus
Query 247 TTTCAATTCAAAGGCCCATGGTTCGTTGGAATGGATGTATTAGC-CACGGTTGATCCAGC 305
|||| |||||| || || ||||||| |||||||||| | | || ||| | |||||||||
Sbjct 136 TTTCCATTCAAGGGACCGTGGTTCGCTGGAATGGATATGCT-GCTCACAGCTGATCCAGC 194
Query 306 TAATATTCATCATA--TAATGAGCTCAAACTTCTCAAATTACATCAAAGG-TCCTATA-T 361
||||||| | | || || | | |||||||||||| |||| | ||||| ||| | | |
Sbjct 195 TAATATTTA-C-TACCTAGTAAACTCAAACTTCTCCAATTTTGTTAAAGGTTCC-A-ACT 250
Query 362 TCCACGAAATTTTTGAAGCTTTTGGAGATGGGATCA-TTA-ATACGGACGCG--GAGCTA 417
|| | || || ||||| || || | |||| | | | | | | | |||| || | || |
Sbjct 251 TCAAAGAGATCTTTGATGCCTTCGAAGAT-GCTTTACTCACA-AAGGACTCGTTG-GC-A 306
Query 418 TGGAGGGAT-TGGAGGAACGCATCTCA-GCTTAT-ATTCAATCATCAAAGGTACCAAA-A 473
|||| | || | | |||| || ||||| || || | |||| |||||| ||| |||| |
Sbjct 307 TGGAAGAATCT-GCGGAAAGCTTCTCAGGC-CATGA-TCAACCATCAAGGGTTTCAAAGA 363
Query 474 CTTCTCAGCAAGTACCACGAAAACTAAAGTCAATGATGGGCTTGTACCTCTTTTCAATCA 533
|| ||| | |||||||| || |||||| || || |||||||| || |||||||||||
Sbjct 364 -TTGTCATTGACTACCACGAGAAGTAAAGTTAAGGACGGGCTTGTTCCACTTTTCAATCA 422
Query 534 CT-TTGCAAATGAAGAG-ATTGTTGTGGACTTGGAAGATGTGTTCCAGAGATTCATGTAT 591
| | || |||| | | ||| || ||| ||||||||||| ||| |||| || |
Sbjct 423 -TATCGCTCGGGAAG-GCACAACTGTAGATTTGCAAGATGTGTTCTGGAGGTTCACGT-T 479
Query 592 -GATATAACCTTC-ATTTTCA-TAACC--G-G-GACCGATCCTAGAAGTCTCTCCATTGA 644
|||| || | || | || || ||||| | | || ||||||||| ||||||||||||
Sbjct 480 CGATACAA-C-TCTAGTTACAGTAACCGGGTGTGA-TGATCCTAGATCTCTCTCCATTGA 536
Query 645 AATGCCAG-AGGTCGAATTTTCCAAAGCTCTTGACGA-TGTTGGAGATGCG-ATTGTGCA 701
|||||||| | | || | | |||||||| ||| | | ||| ||| | | || || |
Sbjct 537 AATGCCAGTA-ATTGAGTCCGCTAAAGCTCTGGAC-ACTATTGTAGAAG-GAATCGTTTA 593
Query 702 TAGGCATATTACACCGAGGTTCGTGTGGAAGTTACAAAAATGGATTGGAATCGGAACAGA 761
||||||| ||| ||| || ||| |||||||| |||||| ||| | ||| |||| | |||
Sbjct 594 TAGGCATGTTAAACCTAGATTCTTGTGGAAGCTACAAAGCTGGGTCGGAGTCGGGATAGA 653
Query 762 GAAGAAGATG-TTGAAAGCTCATGCCACTTTTGACCGTGTTTGTGAAAAAATA-ATAGCA 819
|||||||||| | | ||||| ||||| |||||| || || |||| ||||| ||| ||
Sbjct 654 GAAGAAGATGATAG-AAGCTGGTGCCATTTTTGATCGAGTGTGTG-CGAAATACATATCA 711
Query 820 GCAAAGAGAGAAGAG-CT--AGGATCACAAGGGATTACATACAACTCTAATGGAGAAAGG 876
|| | |||||||||| | | |||||||||||| | | || ||||||||||||
Sbjct 712 GCCAGGAGAGAAGAGATTAAAAGATCACAAGGGA-T---T--AA---TAATGGAGAAAGT 762
Query 877 GAGGATCTTTTAACATCCT-TCATAAAGCTTGATGCAACCAAGTACGAGGTTTTGAAACC 935
|| ||||||| |||| || ||||||||||||| ||||||||||| || | || | ||
Sbjct 763 GAACATCTTTTGACAT-CTCACATAAAGCTTGATACAACCAAGTACCAGCTCATGGATCC 821
Query 936 TAGTC-ATGATAAGTTCCTCAGGGAC-TTCACAATAGGTTTCA-TGGC-AGCTGGGAGAG 991
|| || |||||||||||||| | ||| | | | | ||| | | | |||||||||||
Sbjct 822 TA-TCAATGATAAGTTCCTCCGAGACAATGTC-TTTGCTTT-ACT-TCTAGCTGGGAGAG 877
Query 992 ATTCCACGGCCTCTACACTCACTTGGTTCTTTTGGAATTTATCTAAAAACCCT-AACGTC 1050
|| |||| |||||| | |||||||||||||| | | ||| || |||||||| | ||
Sbjct 878 ATACCACTGCCTCTGCTCTCACTTGGTTCTTCTCGTTTTTGTCCGAAAACCCTCTA-GTG 936
Query 1051 TTAACCAAGATTCTCCAAGAGATCAACACAAATCTACCAAGAACCGGAAGTGACCA--AG 1108
| || | ||||| ||||||||| |||| | ||||||||||| | |||| ||| ||
Sbjct 937 GTGACTAGGATTCGCCAAGAGATTGACACGATTCTACCAAGAAGTAGTAGTGGCCACGAG 996
Query 1109 A---CA-----TG-T-C-AT--CGTACTTGAACAAGTTGGTGTACTTACATGG-TGCATT 1154
| || || | | || |||||| |||||||| ||||| ||||| || |||||
Sbjct 997 AGGCCATCTTGTGATGCAATGGAGTACTTAAACAAGTTAGTGTATTTACA-GGCCGCATT 1055
Query 1155 GAGTGAATCAATGAGGCTTTACCCACCAATACCAT-TCCAACGCAAGTCTCCAATCA-AA 1212
| ||||| |||||||||||| |||||| | || | || | || |||||| | | ||
Sbjct 1056 GTGTGAAACAATGAGGCTTTGCCCACCGGTTCC-TCTCGAGCGTTTGTCTCCTGT-AGAA 1113
Query 1213 GAAGATGTGCTTCCAAGTGGACATAAAGTCAAATCAAATATCAA-TATTATGATCTTTAT 1271
|||||||||||||||||||||||||||| || |||| |||| |||| || |||||||
Sbjct 1114 TCAGATGTGCTTCCAAGTGGACATAAAGTCGAAGCAAAC-TCAAATATTTTGGTCTTTAT 1172
Query 1272 CTACGCCATGGGGAGAATGAAAACCATATGGGGAGAAGACGCAATG-GAGTTCAAGCCAG 1330
|| | |||| || |||| | | ||||||||||||| ||| | || ||||||||||
Sbjct 1173 TTATGGGGTGGGTAGGATGAGAGCTGTATGGGGAGAAGATGCA-TCAGAATTCAAGCCAG 1231
Query 1331 AGAGATGGATTTCAGAGACAGGAGGGGTGAGACATG-AGCCTTC-TTACAAGTTCTTATC 1388
||||||||||||| ||||| |||| | ||||||||| | ||| | || |||||||||| |
Sbjct 1232 AGAGATGGATTTCCGAGACCGGAGAGTTGAGACATGTA-CCTGCCTT-CAAGTTCTTAGC 1289
Query 1389 CTTCAATGCCGGCCCAAGAACT-TGTCTCGGTAAG-AATTTAGCTATGAATTTGA-TGAA 1445
||||||||||||||||||| | || |||||||| || | |||||||| || | ||||
Sbjct 1290 ATTCAATGCCGGCCCAAGAA-TATGCCTCGGTAAACAAAT-AGCTATGA-TTCAAATGAA 1346
Query 1446 GACGGTGATCGTGGAGATATTACAAAACTATGAGATTAAGATTGTCAGTGGACAAAAGAT 1505
|| ||| |||||||||||||||||||||||| |||||| ||| || || || ||| |
Sbjct 1347 GATTGTGGCCGTGGAGATATTACAAAACTATGACATTAAGGTTGCCAAAGGGCAGAAGTT 1406
Query 1506 TGAGCCAAA-ACCTGGTCTCATTCTTCACA-TGAAGCATGGACTTAAAGTCACAATGA-C 1562
||| ||| | || | || | |||||| | | |||||||||| |||| || || || | |
Sbjct 1407 TGAACCAGATAC-TAGTTTAATTCTT-AGAATGAAGCATGGGTTTAAGGTTACGATTAAC 1464
Query 1563 TAAGAAATGTTC 1574
|||| ||||||
Sbjct 1465 -AAGAGATGTTC 1475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66086575075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5