BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47640.1
Length=1037
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923075 jgi|Araly1|923075|scaffold_104356.1 1157 0.0
> Ahg923075 jgi|Araly1|923075|scaffold_104356.1
Length=727
Score = 1157 bits (626), Expect = 0.0
Identities = 693/725 (96%), Gaps = 6/725 (1%)
Strand=Plus/Plus
Query 113 AGAGTGCGACGGTGGACGATGACGCTTTTTCACTTCTTCAACTGTGCGATTCTCACATTC 172
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 AGAGAGCGACGGTGGACGATGACGCTTTTTCACTTCTTCAACTGTGCGATTCTCACATTC 62
Query 173 GGTCCTCACGCGGTCTACTACTCCGCCACTCCCTTATCTGAATATGATACACTTGGAACC 232
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 GGTCCTCACGCCGTCTACTACTCCGCCACTCCCTTATCTGAATATGATACACTTGGAACC 122
Query 233 TCCGTGAAAGCTGCTGTTGTTTACCTTGCTACTGCATTGGTTAAGCTTGTTTGTTTGGCG 292
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 123 TCCGTGAAAGCTGCTGTTGTTTACCTTGCTACTGCATTGGTTAAGCTTGTTTGTTTAGCG 182
Query 293 ACTTTTCTGCAAGTGTCTGAGACTGAAGTGTTTGACCCATACCAGGAAGCATTGAAAGCG 352
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 183 ACTTTTCTGCAAGTTTCTGAGACTGAAGTATTTGACCCATACCAGGAAGCATTGAAAGCA 242
Query 353 ATGATTGGATTCATAGATGTCGCTGGTCTGTATTATGCTCTGGCCCAGCTGACTCACAGG 412
|||||||| |||||||| || |||||||| ||||||||||||||||||||||| ||||||
Sbjct 243 ATGATTGGCTTCATAGACGTTGCTGGTCTATATTATGCTCTGGCCCAGCTGACACACAGG 302
Query 413 AACATCTCCCAAAACCATAAGTTTCAGGCTGTTGGTCTCGGGTGGGCATTCGCGGATTCT 472
|||||||||||||||||||||||||| |||||||| || || ||||||||||| ||||||
Sbjct 303 AACATCTCCCAAAACCATAAGTTTCAAGCTGTTGGCCTTGGATGGGCATTCGCAGATTCT 362
Query 473 GTTTTGCACAGGTTGGCACCTCTCTGGGTTGGTGCTCGAGGACTGGAGTTCACTTGGGAT 532
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 363 GTTTTGCACAGGTTGGCACCTCTCTGGGTCGGTGCTCGAGGACTGGAGTTCACTTGGGAT 422
Query 533 TATGTTTTGCAAGGGCTTGAAGCCAATGCAAATCTGGTGTTCACGATATCTCTAGCTGCA 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 TATGTTTTGCAAGGGCTTGAAGCCAATGCAAATCTGGTGTTCACGATATCTCTAGCTGCA 482
Query 593 CTAGGTTCATTAATGTGGCTACGCAAGAACAAGCCGAAGAGTCTGATCCCCATCATATAC 652
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 CTAGGTTCTTTGATGTGGCTACGCAAGAACAAGCCGAAGAGTCTGATCCCCATCATATAC 542
Query 653 ACATGTGCAGTCATCATTGCGACAATGCCTTCGATCACAAGCTATCTAAAGAGAGTCAAT 712
|| |||||||||||||| || |||||||| || ||||||||||||||||||||||||| |
Sbjct 543 ACTTGTGCAGTCATCATCGCAACAATGCCGTCTATCACAAGCTATCTAAAGAGAGTCA-T 601
Query 713 GG-ATGGCATTTCCCGAAAATTGTTGGGTTTGAGCTGGCGACTTCTCTGGTAATGGCTTT 771
|| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 602 GGGATGGCATTTCCCGAAAATTGTTGGGTTTGAGCTTGTGACTTCTCTGGTAATGGCTTT 661
Query 772 TATCAGTTGTCAACTCTTCATCCTCTGTCAGAGACCGTCTTTGTGAGTGATTCCACTTCC 831
|||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct 662 TATCAGTTGTCAACTCTTCATCCTCTGTCAGAGACCGTCTTTGTGA-T--T-CCACTTCC 717
Query 832 CAGCA 836
|||||
Sbjct 718 CAGCA 722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38580392004
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5