BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47655.1
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473910 jgi|Araly1|473910|fgenesh2_kg.1__3864__AT1G47655.1 896 0.0
Ahg910452 jgi|Araly1|910452|Al_scaffold_0001_706 126 3e-28
Ahg947850 jgi|Araly1|947850|scaffold_704079.1 54.7 1e-06
> Ahg473910 jgi|Araly1|473910|fgenesh2_kg.1__3864__AT1G47655.1
Length=700
Score = 896 bits (485), Expect = 0.0
Identities = 642/712 (90%), Gaps = 34/712 (5%)
Strand=Plus/Plus
Query 10 ctttctctcttctctcttctct-ccattaacttctctctcgttttctcatactctcAACT 68
||||| || ||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 4 CTTTCGCT-TTCTCTCTTCTCTCCCATTAACTTCTCTCTCGTTTTCTCATAGTCTCAACT 62
Query 69 TAATATGCCGTCGGAACCAAACCAAACCCGACCCACCAGAGTTCAGCCCTCAACGGCGGC 128
| | |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 63 T-A-ATGCCGTCGGAACCAAACCAAACCCGACCCACCAGAATTCAGCCCTCTACGGCGGC 120
Query 129 TTACCCACCGCCAAATCTGGCTGAGCCTCTTCCTTGTCCTCGCTGCAACTCCACCACCAC 188
||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 121 TTACCCACCTCCAAATCTGGCTGAGCCTCTCCCATGTCCTCGCTGCAACTCCACCACCAC 180
Query 189 CAAGTTCTGTTACTACAACAACTATAACCTCGCTCAGCCTCGCTACTACTGCAAATCTTG 248
|||||||||||||||||||||||| || || ||||||||||| |||| ||||||||||||
Sbjct 181 CAAGTTCTGTTACTACAACAACTACAATCTTGCTCAGCCTCGTTACTTCTGCAAATCTTG 240
Query 249 CCGCCGTTACTGGACTCAAGGTGGTACACTCCGTGACGTCCCCGTCGGTGGTGGAACTCG 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCGCCGTTACTGGACTCAAGGTGGTACACTCCGTGACGTCCCCGTCGGTGGTGGAACTCG 300
Query 309 TCGAAGCTCCTCAAAACGTCACCGTTCTTTCTCCACCACTGCCACCTCCTCTTCCTCCTC 368
||| ||||| |||||||||||||| ||||||||||| || || |||||||||||||||||
Sbjct 301 TCGGAGCTCTTCAAAACGTCACCGCTCTTTCTCCACTACCGCAACCTCCTCTTCCTCCTC 360
Query 369 TTCTTCCGTCATCACCACCACGACACAAGAACCAGCCACGACTGAAGCGAGTCAAACTAA 428
|||||||||||||||||| || || ||||| ||||||| | || ||| | | ||
Sbjct 361 TTCTTCCGTCATCACCACGAC--CA-AAGAAGCAGCCAC-A---AAT-GAG--A--CGAA 408
Query 429 GGTTACTAATTTAATTTCAGGTCATGGAAGCTTTGCTTCTCTGTTAGGTTTAGGAAGTGG 488
|| || |||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 409 GGGTAGTAATGTAATTTCAGGTCATGGAAGCTTTGCTTCTCTGTTGGGTTTAGGAAGTGG 468
Query 489 AAATGGTGGGTTGGATTACGGGTTTGGGTA------CGGGTACGGGC------------T 530
||||||||||||||||| |||||||||||| ||||||||||| |
Sbjct 469 AAATGGTGGGTTGGATTTCGGGTTTGGGTATGGGTACGGGTACGGGCACGGGCACGGGCT 528
Query 531 TGAGGAGATGAGTATTGGGTATCTTGGAGATTCTTCCGTAGGAGAGATTCCGGTGGTTGA 590
|||||| |||||| |||||||||||||||| || |||| || ||||||||||||||||||
Sbjct 529 TGAGGATATGAGTGTTGGGTATCTTGGAGACTCCTCCGGAGTAGAGATTCCGGTGGTTGA 588
Query 591 TGGTTGTGGTGGTGACACGTGGCAGATTGGGGAGATTGAAGGTAAAAGTGGAGGAGACAG 650
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 TGGTGGTGGTGGTGACACGTGGCAGATTGGGGAGATTGAAGGTAAAAGTGGAGGAGACAG 648
Query 651 TTTGATATGGCCTGGTCTTGAGATCTCAATGCAAACCAACGATGTTAAGTGA 702
||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 649 TTTAATATGGCCTGGTCTTGAGATATCAATGCAAACCAACGATGTTAAGTGA 700
> Ahg910452 jgi|Araly1|910452|Al_scaffold_0001_706
Length=987
Score = 126 bits (68), Expect = 3e-28
Identities = 115/138 (83%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 163 TGTCCTCGCTGCAACTCCACCACCACCAAGTTCTGTTACTACAACAACTATAACCTCGCT 222
|||||||| ||| |||||| || ||| |||||||||||||||||||||||||||||| ||
Sbjct 223 TGTCCTCGATGCGACTCCAGCAACACTAAGTTCTGTTACTACAACAACTATAACCTCACT 282
Query 223 CAGCCTCG-CTACTACTGCAAATCTTGCCGCCGTTACTGGACTCAAGGTGGTACACTCCG 281
|||||||| | ||| ||||||| |||||| || |||||||| ||||| || | || |
Sbjct 283 CAGCCTCGTC-ACTTCTGCAAAGGTTGCCGTCGCTACTGGACACAAGGCGGCGCCCTGAG 341
Query 282 TGACGTCCCCGTCGGTGG 299
||||||| ||||||||
Sbjct 342 AAACGTCCCTGTCGGTGG 359
> Ahg947850 jgi|Araly1|947850|scaffold_704079.1
Length=1450
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 187 ACCAAGTTCTGTTACTACAACAACTATAA 215
|||||||||||||||||||||||||||||
Sbjct 495 ACCAAGTTCTGTTACTACAACAACTATAA 523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34958714889
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5