BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47670.1
Length=1779
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473911 jgi|Araly1|473911|fgenesh2_kg.1__3865__AT1G47670.1 2837 0.0
> Ahg473911 jgi|Araly1|473911|fgenesh2_kg.1__3865__AT1G47670.1
Length=1727
Score = 2837 bits (1536), Expect = 0.0
Identities = 1665/1728 (96%), Gaps = 6/1728 (0%)
Strand=Plus/Plus
Query 10 aaaaaaaaaaCATCATTTCTTCTCGCACTCTTCACCTGCTCCAATGGACGAAAGACCCGA 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAAAAAACATCATTTCTTCTCGCACTCTTCACCTGCTCCAATGGACGAAAGACCCGA 60
Query 70 GACAGAGCTAATATCAATACCAGCCACACCACGAGTTTCAACACCGGAGATTCTAACTCC 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACAGAGCTAATATCAATACCAGCCACACCACGAGTTTCAACACCGGAGATTCTAACTCC 120
Query 130 CTCCGGTCAAAGATCACCTCGTCCGGCCACCAAACCATCGTCGGCGACATGGACTCCGAC 189
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 CTCCGGTCAAAGATCACCTCGTCCGGCCACCAAACCGTCGTCGGCGACATGGACTCCGAC 180
Query 190 TTCGTTCATATCACCGAGGTTCTTGAGTCCGATTGGTACACCAATGAAACGAGTTCTTGT 249
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCTTTCATATCTCCGAGGTTCTTGAGTCCGATTGGTACACCAATGAAACGAGTTCTTGT 240
Query 250 GAACATGAAAGGGTATCTTGAAGAAGTTGGTCATCTCACTAAGCTAAACCCACAAGATGC 309
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 CAACATGAAAGGGTATCTTGAAGAAGTTGGTCATCTTACTAAGCTAAACCCACAAGATGC 300
Query 310 TTGGCTTCCAATCACTGAATCTCGTAATGGAAACGCTCATTACGCTGCTTTTCACAATCT 369
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 TTGGCTTCCAATCACTGAGTCTCGTAATGGAAACGCTCATTACGCTGCGTTTCACAATCT 360
Query 370 CAACGCTGGTGTTGGTTTTCAAGCCCTTGTTCTTCCCGTCGCGTTTGCGTTTCTTGGCTG 429
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAACGCTGGTGTTGGTTTCCAAGCCCTTGTTCTTCCCGTCGCGTTTGCGTTTCTTGGCTG 420
Query 430 GAGTTGGGGAATACTGTCTTTAACAATAGCATATTGCTGGCAACTCTACACACTGTGGAT 489
||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAGTTGGGGAATACTATCCTTGACAATAGCATATTGCTGGCAACTCTACACACTGTGGAT 480
Query 490 TCTGGTTCAGTTGCACGAAGCTGTCCCCGGGAAACGCTACAATCGATATGTCGAGCTTGC 549
||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 481 TCTAGTTCAGTTGCACGAAGCTGTCCCCGGGAAGCGATACAATCGATATGTCGAGCTTGC 540
Query 550 ACAAGCTGCTTTTGGAGAAAGGTTAGGAGTATGGCTTGCATTGTTTCCTACGGTTTACTT 609
||||||||| |||||||||||||| ||||| ||||||||| |||||||||||||||||||
Sbjct 541 ACAAGCTGCATTTGGAGAAAGGTTGGGAGTTTGGCTTGCACTGTTTCCTACGGTTTACTT 600
Query 610 ATCAGCAGGAACCGCGACAGCGCTGATTCTGATCGGTGGAGAGACAATGAAACTCTTCTT 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATCAGCAGGAACCGCGACAGCGCTGATTCTGATCGGTGGAGAGACAATGAAACTCTTCTT 660
Query 670 CCAGATAGTTTGCGGTCCATTATGCACCTCGAATCCGTTAACAACAGTTGAATGGTATTT 729
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 661 CCAAATAGTTTGCGGTCCATTATGCACCTCGAACCCGTTAACAACAGTGGAATGGTATTT 720
Query 730 GGTGTTTACATCTCTCTGCATCGTTCTGTCTCAGCTACCAAACCTCAATTCTATTGCGGG 789
||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 721 GGTGTTTACATCTCTATGCATCGTTCTGTCTCAGCTTCCAAACCTCAATTCGATTGCGGG 780
Query 790 ACTCTCCTTAATAGGAGCAGTGACTGCAATAACTTACTCCACAATGGTTTGGGTTCTCTC 849
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ACTGTCCTTAATAGGAGCAGTGACTGCAATAACTTACTCCACAATGGTTTGGGTTCTCTC 840
Query 850 TGTGAGCCAACCAAGACCAGCCACTATCTCATACGAGCCTCTTTCTATGCCTTCGACTTC 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TGTGAGCCAACCAAGACCAGCCACTATCTCATACGAGCCTCTTTCTATGCCTTCGACTTC 900
Query 910 TGGTTCACTCTTCGCTGTTTTGAATGCTCTTGGCATTATAGCTTTTGCCTTCAGAGGTCA 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TGGTTCACTCTTCGCTGTTTTGAATGCTCTTGGCATTATAGCTTTTGCCTTCAGAGGTCA 960
Query 970 CAACTTGGTTTTGGAAATTCAGTCGACGATGCCATCAACGTTTAAGCATCCTGCTCACGT 1029
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 961 CAACTTGGTTCTGGAAATTCAGTCGACGATGCCATCAACGTTTAAGCATCCAGCTCATGT 1020
Query 1030 ACCAATGTGGAGAGGAGCCAAAATCTCTTACTTCCTCATTGCTCTGTGTATCTTTCCAAT 1089
|||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1021 ACCAATGTGGAGAGGAGCGAAAATTTCTTACTTCTTCATTGCTCTGTGTATCTTTCCAAT 1080
Query 1090 CTCCATCGGAGGCTTTTGGGCTTATGGGAACCTTATGCCTTCAGGAGGTATGCTTGCTGC 1149
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1081 CTCCATTGGAGGCTTTTGGGCTTATGGGAACCTTATGCCTTCAGGGGGTATGCTTGCTGC 1140
Query 1150 TTTGTATGCATTCCACATTCACGATATCCCGAGAGGCTTATTAGCGACGGCATTTCTCCT 1209
||| ||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 1141 TTTATATGCATTCCACATTCATGACATTCCGAGAGGCTTATTAGCGACGGCATTTCTCCT 1200
Query 1210 AGTAGTCTTCAGCTG-CTTGAGCAGTTTTCAGATATACTCCATGCCTGCCTTTGACAGCT 1268
||||||||||||||| || ||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1201 AGTAGTCTTCAGCTGTCT-GAGCAGTTTTCAGATATACTCGATGCCGGCCTTTGACAGCT 1259
Query 1269 TTGAAGCTGGCTACACAAGCAGAACCAACAAGCCGTGTTCGATTTGGGTCAGATCAGGTT 1328
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1260 TTGAGGCTGGCTACACAAGCAGAACCAACAAGCCGTGTTCGATCTGGGTCAGATCAGGTT 1319
Query 1329 TCCGAGTCTTTTTTGGTTTTGTCTCGTTTTTCATCGGTGTTGCTCTCCCTTTTCTGTCTA 1388
||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1320 TCCGAGTCTTTTTCGGTTTTGTCTCGTTTTTCATCGGTGTTGCTCTCCCTTTCCTATCTA 1379
Query 1389 GTCTTGCGGGGTTGCTCGGTGGACTCACTCTCCCGGTCACATTTGCTTATCCTTGCTTCA 1448
|||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1380 GTCTCGCGGGTTTGCTTGGTGGACTCACGCTCCCGGTCACATTTGCTTATCCTTGCTTCA 1439
Query 1449 TGTGGGTCTTGATTAAGAAACCGGCGAAATACAGTTTCAATTGGTATTTCCATTGGGGAT 1508
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1440 TGTGGGTCTTGATTAAGAAACCGGCGAAATACAGTTTCAATTGGTATTTCCACTGGGGAT 1499
Query 1509 TAGGTTGGTTGGGAGTTGCATTCAGCTTGGCATTCTCCATAGGTGGGATCTGGAGTATGG 1568
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1500 TAGGTTGGTTGGGAGTTGCTTTCAGCTTGGCATTCTCCATAGGTGGGATTTGGAGTATGG 1559
Query 1569 TTACCAATGGACTTAAGCTCAAGTTCTTCAAGCCGCCTAACTAAGTAGTAATAGCCTAt- 1627
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1560 TTACCAATGGACTTAAGCTCAAGTTCTTCAAGCCGCCTAACTAAGTAGTAATATCCTATA 1619
Query 1628 -g-tggttttgtttggttgggaagtttgaagttttaagagattttgtatt-tctgtgttt 1684
| ||||||||||||||||| |||||||| |||||||||||||||||||| | |||||||
Sbjct 1620 TGGTGGTTTTGTTTGGTTGGCAAGTTTGATGTTTTAAGAGATTTTGTATTATATGTGTTT 1679
Query 1685 tgtttAAGAGTGCCTATGTTTTGAAGTTGGAACAATGTAATGTGTATT 1732
||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1680 TGTTTAAGAGTGCCTTTGTTTTGAAGTTGGAACAATGTAATGTGTATT 1727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66772199485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5