BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47720.1
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473913 jgi|Araly1|473913|fgenesh2_kg.1__3867__AT1G47720.1 1081 0.0
Ahg900457 jgi|Araly1|900457|Al_scaffold_0004_1107 505 3e-142
> Ahg473913 jgi|Araly1|473913|fgenesh2_kg.1__3867__AT1G47720.1
Length=926
Score = 1081 bits (585), Expect = 0.0
Identities = 766/853 (90%), Gaps = 13/853 (2%)
Strand=Plus/Plus
Query 1 AAAAATCTCAAATTTCCCCAGTAGATGAACACGTTCTTCAAACTCGGAAGCTTAATCCAA 60
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAATTCTCAAATTTTCCCAGTAGATGAACACGTTCTTCAAACTCGGAAGCTTAATCCAA 60
Query 61 CGCACTGCTTCTCAAATCTCTTCTTCTTTCCCAAAATCTCGTTTCTTCTCCGATGGAGAA 120
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 61 CGCACTGCTTCTCAAATCTCTTCTTCTTTCCCTAAATCTCGCTTCTTCTCCGATGGAGAA 120
Query 121 AGTGCTGTTTATCACCATGCGCGTTTGTTCAAGAAACCACTATCTACCAAGCTTAAATTC 180
||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 121 AGTGCCGTTTATCACCATGCGCGTTTGTTCAAGAAACCATTATCTACCAAGCTAAAATTC 180
Query 181 AATCTTGTGAACTCCGTGAGTCTTATGGGTTTCGTTGATCGATCTATTCAAGTCATGAAC 240
|||||||||||||| ||||| ||||||||||||||||||||| | || | ||||||| ||
Sbjct 181 AATCTTGTGAACTCTGTGAGCCTTATGGGTTTCGTTGATCGACCCATACGAGTCATGGAC 240
Query 241 ACCGGACCTGATAGGTTCGGTGTTTTCACTATTCTTAGAGTCAAAGACCCTCTCAATCCA 300
||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| ||||
Sbjct 241 ACCGGACCTGATAATTTCGGTGTTTTCACTATGCTTAGAGTTAAAGACCCTCTCATTCCA 300
Query 301 AACCGGAGCTTTAGGATATCACTTAGAATGTGGGACGCAATGGCACGGACTTGTAT-TGC 359
|||||||||||||||||||| ||||| ||||||||| ||||||||||||| ||||| | |
Sbjct 301 AACCGGAGCTTTAGGATATCTCTTAGTATGTGGGACACAATGGCACGGACGTGTATCT-C 359
Query 360 GCATCTGAAGCTAAATGATCATATACTTGTCTCAGGCCGTCTTGAGTCTTACAGCAAGAG 419
| ||||||||| ||||||||| ||||||||||||||||| || | ||| ||||||||||
Sbjct 360 GTATCTGAAGCCAAATGATCACATACTTGTCTCAGGCCGACTGGTTTCTCACAGCAAGAG 419
Query 420 CTC-CAGCGATGTATATAGTGGCTTAAATCTCGATTATCAGGTTAAAGTGGCAGAAGTGA 478
| | | |||||| | |||| |||||| || | ||||| ||||||| |||| |||| || |
Sbjct 420 CCCTC-GCGATGAAAATAGCGGCTTAGATTTGGATTACCAGGTTAGAGTGACAGAGGTTA 478
Query 479 ATTATGTGGCGGCTCCACCAAGTCACGTCTTAGATTCTCAGATAT-CC-AAAAACCCAAA 536
||||||||||||||||||||| |||||||||||||||||||| || || ||||||| |
Sbjct 479 ATTATGTGGCGGCTCCACCAAATCACGTCTTAGATTCTCAGA-ATTCCGAAAAACC-AGT 536
Query 537 AAC-GAAAACAGAGGATGATATTGAAGAATCCAAGAAAGATGAGATATACTTGTGGCAAG 595
| | ||| |||| |||| ||| ||||||||||||| ||| ||||||||||||||||||
Sbjct 537 ATCAGAAG-CAGAAGATGGTATAGAAGAATCCAAGATTGATAAGATATACTTGTGGCAAG 595
Query 596 TCTTCTTTTCGAATCCATACGATTGGTGGGACAACAGGAGAAATAAGAAGAACCCAAAGC 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 596 TCTTCTTTTCGAATCCATACGATTGGTGGGACAACAGGAGAAATAAGAAGAACCCAATGC 655
Query 656 AACCCGACTTTAAGCATAAAGATACAGGTGAAGCTCTCTGGCTTTG-CTCAGATTTACCG 714
|||| ||||||||||| ||||||||||||||||||||||||||| | ||| ||| |||||
Sbjct 656 AACCTGACTTTAAGCACAAAGATACAGGTGAAGCTCTCTGGCTT-GACTCGGATATACCG 714
Query 715 GACTGGATTACTAGACGACTTGAATTGTTCGACCAGAAAAACCGCTTTTACGATGAAGAA 774
|| ||||||| ||||||||||||| |||| ||||||| |||||||| ||||||||| |||
Sbjct 715 GATTGGATTAATAGACGACTTGAACTGTTTGACCAGAGAAACCGCTGTTACGATGAGGAA 774
Query 775 AAAACACGTCGTGACCGTCTTTCTGACTATATTTAGGACGAGATATTCTTGGGAAATTAC 834
||||||||||||| |||||||||||| | ||||||||| | ||||||||||| |||||
Sbjct 775 AAAACACGTCGTGGCCGTCTTTCTGAGTGGATTTAGGACTAT-TATTCTTGGGACATTAC 833
Query 835 AAGTATGTTGCAT 847
|||| ||||||||
Sbjct 834 AAGTCTGTTGCAT 846
> Ahg900457 jgi|Araly1|900457|Al_scaffold_0004_1107
Length=465
Score = 505 bits (273), Expect = 3e-142
Identities = 419/486 (86%), Gaps = 24/486 (5%)
Strand=Plus/Plus
Query 328 ATGTGGGACGCAATGGCACGGACTTGTATTGCGCATCTGAAGCTAAATGATCATATACTT 387
|||||||||| |||||||| | ||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGTGGGACGTGATGGCACGCAAGTGTATTGCGCATCTGAAGCTAAATGATCACATACTT 60
Query 388 GTCTCAGGCCGTCTTGAGTCTTACAGCAAGAGCTCCAGCGATGTATATAGTGGCTTAAAT 447
||||||||||| |||| ||||| ||||||| |||||| |||||||||| |||||| ||
Sbjct 61 GTCTCAGGCCGCCTTGCTTCTTATGGCAAGAGATCCAGCAATGTATATAGCGGCTTAGAT 120
Query 448 CTCGATTATCAGGTTAAAGTGGCAGAAGTGAATTATGTGGCGGCTCCACCAAGTCACGTC 507
| ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 CACGAATATCATGTTAAAGTGACAGAAGTGAATTATGTGGCGGCTCCACCAAGTCACGTC 180
Query 508 TTAGATTCTCAGATATCCAAAAACCCAAAAACGAAAACAGAGGATGATATTGAAGAATCC 567
||||| | || ||| ||||||||||| || ||||||| | || || ||||||
Sbjct 181 TTAGA-T-TC-----TCCGAAAACCCAAAACCGGAAACAGA--A-GA-ATCCAAGAAT-- 227
Query 568 AAGAAAGATGAGATATACTTGTGGCAAGTCTTC-TTTTCGAATCCATACGATTGGTGGGA 626
| ||||| | || || |||||||||||| || ||||||||||||||||||||||||||
Sbjct 228 --G-AAGAT-ATAT-TA-TTGTGGCAAGTC-TCTTTTTCGAATCCATACGATTGGTGGGA 280
Query 627 CAACAGG-AGAAATAAGAAGAACCCAAAGCAACCCGACTTTAAGCATAAAGATACAGGTG 685
||||||| ||| ||||||||| ||||| ||||| |||||||| ||||||||||||||||
Sbjct 281 CAACAGGGAGAGATAAGAAGAGCCCAAGGCAACATGACTTTAAACATAAAGATACAGGTG 340
Query 686 AAGCTCTCTGGCTTTG-CTCAGATTTACCGGACTGGATTACTAGACGACTTGAATTGTTC 744
|||||||||||||| | ||| ||| |||| || ||||||||||||||||| ||||| |||
Sbjct 341 AAGCTCTCTGGCTT-GACTCTGATATACCAGATTGGATTACTAGACGACTGGAATTCTTC 399
Query 745 GACCAGAAAAACCGCTTTTACGATGAAGAAAAAACACGTCGTGACCGTCTTTCTGACTAT 804
||||||| |||||||| |||||||| |||||| ||||||||| ||||||||||||||||
Sbjct 400 GACCAGAGAAACCGCTGCTACGATGAGGAAAAATCACGTCGTGGCCGTCTTTCTGACTAT 459
Query 805 ATTTAG 810
||||||
Sbjct 460 ATTTAG 465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35988033648
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5