BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47730.1
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336931 jgi|Araly1|336931|fgenesh1_pg.C_scaffold_1003496 638 0.0
Ahg314240 jgi|Araly1|314240|fgenesh1_pm.C_scaffold_1003020 331 6e-90
> Ahg336931 jgi|Araly1|336931|fgenesh1_pg.C_scaffold_1003496
Length=1140
Score = 638 bits (345), Expect = 0.0
Identities = 656/802 (82%), Gaps = 37/802 (5%)
Strand=Plus/Plus
Query 397 AAAGCAGCAACCCCTATAATTTGGAACCCTACTATGAGAAAG---TT--C-AAACCTTTA 450
||||||| || |||| || ||||||||||||||||||||||| || | |||||||
Sbjct 352 AAAGCAGGAAACCCTTTAGTTTGGAACCCTACTATGAGAAAGCTCTTACCTTTACCTTTA 411
Query 451 CGCAAGCTGGATG-AGAGGTGGAAGAATATAAAAGTCTCTTTAGGGTACGATCCAGTTGA 509
||||| | || | |||| ||||||| ||| || ||| |||||| || || ||||| ||
Sbjct 412 CGCAAACCCGA-GAAGAGCTGGAAGAGTATGAACTTCTTTTTAGGTTATGAGCCAGTCGA 470
Query 510 TGGTAAACACAAAGTAGTGTGCATGCCGTATGGTA-ATGCTT-TT-T-ATGAGTGTCGGG 565
|||||||||||||||||||||||||| | ||||| | |||| || | ||||||||| ||
Sbjct 471 AGGTAAACACAAAGTAGTGTGCATGCCTTGTGGTAGA-GCTTATTATGATGAGTGTCAGG 529
Query 566 TGTTAACATTGGGATCAGATCAAG-A--ATGGAGAACTGTTAAAACCAACCACAAAAATA 622
| |||||||||||||||||||||| | ||||||||| || |||||||||||||| |
Sbjct 530 TTTTAACATTGGGATCAGATCAAGAATCATGGAGAACGGTCAAAACCAACCACAAGGGTG 589
Query 623 GCCCTTTTACAT-TCCATGGTGGAGTTTGTTATAGACAATCCAGATGCATCAACGGTGTT 681
||||| | || | ||||| | | |||| ||| |||||| |||||||||||| ||||||
Sbjct 590 GCCCTGTCAC-TGTCCATCGAACAATTTGCTATGGACAATGCAGATGCATCAATGGTGTT 648
Query 682 ATATATTATCGAGCTGATACTAATTCTGGTCGGGTGATATTGAGTTTCGATGTAAGATCT 741
|||||||| | ||| | || ||||| || || ||| ||| ||||||||||||||||||||
Sbjct 649 ATATATTACCTAGCCGGTATTAATTTTGTTCTGGTTATAATGAGTTTCGATGTAAGATCT 708
Query 742 GAACGGTTCGATGTGATAGAATTACCATGGGATGAGAAT-TTTGGGCTTGTGATGATGAT 800
||| |||||||||||||||||||||||||||| | || ||||| || |||| ||||
Sbjct 709 GAAAAGTTCGATGTGATAGAATTACCATGGGATAATAAGCTTTGGCCTAC-GATGTTGAT 767
Query 801 GTCTTATAAAGGAAGGTTAGCTTGTCTTGGTTTCAATCATGAGAAGAATAGTCGTTCAAT 860
|||||| |||||||||||| ||||||| ||| |||| | ||| ||||||||||||||
Sbjct 768 ATCTTATGAAGGAAGGTTAGTTTGTCTTAGTTCCAATG--G-GAACAATAGTCGTTCAAT 824
Query 861 GTGGGTTTTGGAGAATGTAGAGCAGC-GCGAATGGTCGTGTCATA-CCTATTTACCTATT 918
||||||||| ||| ||| |||| | | | ||||||||| || ||| ||| ||||||| ||
Sbjct 825 GTGGGTTTTAGAGGATGCAGAGAAACAG-GAATGGTCGAGTTATAACCT-TTTACCTCTT 882
Query 919 TCTCATTATGAGCCGGGTTTGGA-GAACTATTTCAATCTAACAGGTATCACTAATGATGG 977
||||| ||||| ||||||| ||| || || |||||| |||| |||||| |||| ||||||
Sbjct 883 TCTCACTATGATCCGGGTTCGGAAGACCT-TTTCAAACTAATAGGTATTACTATTGATGG 941
Query 978 TGAACTGATTTACGTACCAAACACTGTGCTCGAA-CGTTTTCATGTTATATATTTTGATG 1036
|||||||||||| ||||||||| | ||| ||||| | |||| |||| |||||| |||||
Sbjct 942 TGAACTGATTTATGTACCAAACGCGGTGTTCGAATC-TTTTGATGTCATATATATTGATC 1000
Query 1037 CAATA-AGAGAGACGTTTAGAAGAGTCAT-ATACAAAGGAGTTGCAGATAAAGGTTTTCG 1094
||| | ||| |||||||||||||||| | ||| | |||| ||| |||||||| |||| |
Sbjct 1001 CAA-AGAGAAAGACGTTTAGAAGAGT-AGGATATAGAGGAATTGGAGATAAAGATTTTAG 1058
Query 1095 ACTACGCAATGGACTTGAAGACAAACCTATACGTAGACTCCACTTTT-TCCCCAATCACA 1153
|| |||||||| ||||| ||| |||||| | ||| | || || |||| |||| |||||||
Sbjct 1059 ACAACGCAATGAACTTGGAGAAAAACCTCTGCGTGGGCTTCAATTTTATCCC-AATCACA 1117
Query 1154 TTGAAACTCTCATGTCTTTGTA 1175
||||||||||||||||||||||
Sbjct 1118 TTGAAACTCTCATGTCTTTGTA 1139
> Ahg314240 jgi|Araly1|314240|fgenesh1_pm.C_scaffold_1003020
Length=1113
Score = 331 bits (179), Expect = 6e-90
Identities = 362/447 (81%), Gaps = 26/447 (6%)
Strand=Plus/Plus
Query 743 AACGG-TTCGATGTGAT-AGAATTACCATGGGATGA-GAATTTTGGGCTTGTGATGATGA 799
||||| ||| ||| ||| || ||||||||||||||| || |||| || ||||||||
Sbjct 676 AACGGTTTCCATGCGATAAG-ATTACCATGGGATGAGGAGTTTT-CGCCAAAGATGATGA 733
Query 800 TGTCTTATAAA-GGAAGGTTAGCTTGTCTTGGTTTCAAT-C-ATGAGAAGAATAGTCGTT 856
| ||||||||| |||| |||||||| ||| || ||| | | ||| || |||||||| ||
Sbjct 734 TATCTTATAAAGGGAA-GTTAGCTTATCTCGG--TCATTCCAATGGGACGAATAGTC-TT 789
Query 857 -CAATGTGGGTTTTGGAGAATGTAGAGCAGCGCGAATGGTCGTGTCATACCTATTTACCT 915
| ||||||||||| ||| ||| | || || | ||||||||| | ||| || |||||||
Sbjct 790 CCTATGTGGGTTTTAGAGGATGCAAAGAAGGGTGAATGGTCGACTTATAACTTTTTACCT 849
Query 916 ATTTCTCATTATGAGCCGG-GTTTGGAGAACTATTTCAATCTAACAGGTATCACTAATGA 974
||||||| ||||| ||| ||| |||| | ||||||| |||| ||||||||| |||||
Sbjct 850 CTTTCTCACTATGA-TCGGAGTTCAGAGACCCATTTCAAGCTAATAGGTATCACCAATGA 908
Query 975 TGGTGAACTGATTTACGTACCAAACACT-GTGCTCGAA-CGTTTTCATGTTATATATTTT 1032
||||||| |||||||||||||| ||| | || ||||| | |||| |||| |||||| ||
Sbjct 909 TGGTGAATTGATTTACGTACCATACA-TGGTATTCGAATC-TTTTGATGTCATATATATT 966
Query 1033 GATGCAATAAGAGAGACGTTTAGAAGAGTCATATACAAAGGAGTTGCAGATAAAGGTTTT 1092
||| |||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 967 GATCCAATAAGAAAGACGTTTAGGAGAGTCAAATACAAAGGAGTTGCAGATAAAGGTTTT 1026
Query 1093 CGACTACGCAATGGACTTGAAGA-CA-AA-CCTATACGTAG-ACTCCACTTTTTC-CCCA 1147
||| |||||||||||||||||| || || ||| ||||| | | | || | || | ||||
Sbjct 1027 AGACAACGCAATGGACTTGAAGAACATAAACCTTTACGTGGGA-TACAATATT-CACCCA 1084
Query 1148 ATCACATTGAAACTCTCATGTCTTTGT 1174
|||| |||| |||||||| |||||||
Sbjct 1085 ATCATGTTGACACTCTCATATCTTTGT 1111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43879477467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5