BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G47730.1 Length=1176 Score E Sequences producing significant alignments: (Bits) Value Ahg336931 jgi|Araly1|336931|fgenesh1_pg.C_scaffold_1003496 638 0.0 Ahg314240 jgi|Araly1|314240|fgenesh1_pm.C_scaffold_1003020 331 6e-90 > Ahg336931 jgi|Araly1|336931|fgenesh1_pg.C_scaffold_1003496 Length=1140 Score = 638 bits (345), Expect = 0.0 Identities = 656/802 (82%), Gaps = 37/802 (5%) Strand=Plus/Plus Query 397 AAAGCAGCAACCCCTATAATTTGGAACCCTACTATGAGAAAG---TT--C-AAACCTTTA 450 ||||||| || |||| || ||||||||||||||||||||||| || | ||||||| Sbjct 352 AAAGCAGGAAACCCTTTAGTTTGGAACCCTACTATGAGAAAGCTCTTACCTTTACCTTTA 411 Query 451 CGCAAGCTGGATG-AGAGGTGGAAGAATATAAAAGTCTCTTTAGGGTACGATCCAGTTGA 509 ||||| | || | |||| ||||||| ||| || ||| |||||| || || ||||| || Sbjct 412 CGCAAACCCGA-GAAGAGCTGGAAGAGTATGAACTTCTTTTTAGGTTATGAGCCAGTCGA 470 Query 510 TGGTAAACACAAAGTAGTGTGCATGCCGTATGGTA-ATGCTT-TT-T-ATGAGTGTCGGG 565 |||||||||||||||||||||||||| | ||||| | |||| || | ||||||||| || Sbjct 471 AGGTAAACACAAAGTAGTGTGCATGCCTTGTGGTAGA-GCTTATTATGATGAGTGTCAGG 529 Query 566 TGTTAACATTGGGATCAGATCAAG-A--ATGGAGAACTGTTAAAACCAACCACAAAAATA 622 | |||||||||||||||||||||| | ||||||||| || |||||||||||||| | Sbjct 530 TTTTAACATTGGGATCAGATCAAGAATCATGGAGAACGGTCAAAACCAACCACAAGGGTG 589 Query 623 GCCCTTTTACAT-TCCATGGTGGAGTTTGTTATAGACAATCCAGATGCATCAACGGTGTT 681 ||||| | || | ||||| | | |||| ||| |||||| |||||||||||| |||||| Sbjct 590 GCCCTGTCAC-TGTCCATCGAACAATTTGCTATGGACAATGCAGATGCATCAATGGTGTT 648 Query 682 ATATATTATCGAGCTGATACTAATTCTGGTCGGGTGATATTGAGTTTCGATGTAAGATCT 741 |||||||| | ||| | || ||||| || || ||| ||| |||||||||||||||||||| Sbjct 649 ATATATTACCTAGCCGGTATTAATTTTGTTCTGGTTATAATGAGTTTCGATGTAAGATCT 708 Query 742 GAACGGTTCGATGTGATAGAATTACCATGGGATGAGAAT-TTTGGGCTTGTGATGATGAT 800 ||| |||||||||||||||||||||||||||| | || ||||| || |||| |||| Sbjct 709 GAAAAGTTCGATGTGATAGAATTACCATGGGATAATAAGCTTTGGCCTAC-GATGTTGAT 767 Query 801 GTCTTATAAAGGAAGGTTAGCTTGTCTTGGTTTCAATCATGAGAAGAATAGTCGTTCAAT 860 |||||| |||||||||||| ||||||| ||| |||| | ||| |||||||||||||| Sbjct 768 ATCTTATGAAGGAAGGTTAGTTTGTCTTAGTTCCAATG--G-GAACAATAGTCGTTCAAT 824 Query 861 GTGGGTTTTGGAGAATGTAGAGCAGC-GCGAATGGTCGTGTCATA-CCTATTTACCTATT 918 ||||||||| ||| ||| |||| | | | ||||||||| || ||| ||| ||||||| || Sbjct 825 GTGGGTTTTAGAGGATGCAGAGAAACAG-GAATGGTCGAGTTATAACCT-TTTACCTCTT 882 Query 919 TCTCATTATGAGCCGGGTTTGGA-GAACTATTTCAATCTAACAGGTATCACTAATGATGG 977 ||||| ||||| ||||||| ||| || || |||||| |||| |||||| |||| |||||| Sbjct 883 TCTCACTATGATCCGGGTTCGGAAGACCT-TTTCAAACTAATAGGTATTACTATTGATGG 941 Query 978 TGAACTGATTTACGTACCAAACACTGTGCTCGAA-CGTTTTCATGTTATATATTTTGATG 1036 |||||||||||| ||||||||| | ||| ||||| | |||| |||| |||||| ||||| Sbjct 942 TGAACTGATTTATGTACCAAACGCGGTGTTCGAATC-TTTTGATGTCATATATATTGATC 1000 Query 1037 CAATA-AGAGAGACGTTTAGAAGAGTCAT-ATACAAAGGAGTTGCAGATAAAGGTTTTCG 1094 ||| | ||| |||||||||||||||| | ||| | |||| ||| |||||||| |||| | Sbjct 1001 CAA-AGAGAAAGACGTTTAGAAGAGT-AGGATATAGAGGAATTGGAGATAAAGATTTTAG 1058 Query 1095 ACTACGCAATGGACTTGAAGACAAACCTATACGTAGACTCCACTTTT-TCCCCAATCACA 1153 || |||||||| ||||| ||| |||||| | ||| | || || |||| |||| ||||||| Sbjct 1059 ACAACGCAATGAACTTGGAGAAAAACCTCTGCGTGGGCTTCAATTTTATCCC-AATCACA 1117 Query 1154 TTGAAACTCTCATGTCTTTGTA 1175 |||||||||||||||||||||| Sbjct 1118 TTGAAACTCTCATGTCTTTGTA 1139 > Ahg314240 jgi|Araly1|314240|fgenesh1_pm.C_scaffold_1003020 Length=1113 Score = 331 bits (179), Expect = 6e-90 Identities = 362/447 (81%), Gaps = 26/447 (6%) Strand=Plus/Plus Query 743 AACGG-TTCGATGTGAT-AGAATTACCATGGGATGA-GAATTTTGGGCTTGTGATGATGA 799 ||||| ||| ||| ||| || ||||||||||||||| || |||| || |||||||| Sbjct 676 AACGGTTTCCATGCGATAAG-ATTACCATGGGATGAGGAGTTTT-CGCCAAAGATGATGA 733 Query 800 TGTCTTATAAA-GGAAGGTTAGCTTGTCTTGGTTTCAAT-C-ATGAGAAGAATAGTCGTT 856 | ||||||||| |||| |||||||| ||| || ||| | | ||| || |||||||| || Sbjct 734 TATCTTATAAAGGGAA-GTTAGCTTATCTCGG--TCATTCCAATGGGACGAATAGTC-TT 789 Query 857 -CAATGTGGGTTTTGGAGAATGTAGAGCAGCGCGAATGGTCGTGTCATACCTATTTACCT 915 | ||||||||||| ||| ||| | || || | ||||||||| | ||| || ||||||| Sbjct 790 CCTATGTGGGTTTTAGAGGATGCAAAGAAGGGTGAATGGTCGACTTATAACTTTTTACCT 849 Query 916 ATTTCTCATTATGAGCCGG-GTTTGGAGAACTATTTCAATCTAACAGGTATCACTAATGA 974 ||||||| ||||| ||| ||| |||| | ||||||| |||| ||||||||| ||||| Sbjct 850 CTTTCTCACTATGA-TCGGAGTTCAGAGACCCATTTCAAGCTAATAGGTATCACCAATGA 908 Query 975 TGGTGAACTGATTTACGTACCAAACACT-GTGCTCGAA-CGTTTTCATGTTATATATTTT 1032 ||||||| |||||||||||||| ||| | || ||||| | |||| |||| |||||| || Sbjct 909 TGGTGAATTGATTTACGTACCATACA-TGGTATTCGAATC-TTTTGATGTCATATATATT 966 Query 1033 GATGCAATAAGAGAGACGTTTAGAAGAGTCATATACAAAGGAGTTGCAGATAAAGGTTTT 1092 ||| |||||||| |||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 967 GATCCAATAAGAAAGACGTTTAGGAGAGTCAAATACAAAGGAGTTGCAGATAAAGGTTTT 1026 Query 1093 CGACTACGCAATGGACTTGAAGA-CA-AA-CCTATACGTAG-ACTCCACTTTTTC-CCCA 1147 ||| |||||||||||||||||| || || ||| ||||| | | | || | || | |||| Sbjct 1027 AGACAACGCAATGGACTTGAAGAACATAAACCTTTACGTGGGA-TACAATATT-CACCCA 1084 Query 1148 ATCACATTGAAACTCTCATGTCTTTGT 1174 |||| |||| |||||||| ||||||| Sbjct 1085 ATCATGTTGACACTCTCATATCTTTGT 1111 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43879477467 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5