BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47740.1
Length=1403
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473914 jgi|Araly1|473914|fgenesh2_kg.1__3868__AT1G47740.1 1517 0.0
> Ahg473914 jgi|Araly1|473914|fgenesh2_kg.1__3868__AT1G47740.1
Length=1303
Score = 1517 bits (821), Expect = 0.0
Identities = 895/932 (96%), Gaps = 0/932 (0%)
Strand=Plus/Plus
Query 214 AAAGTTTCAGTCTCAGGTGGTTCACAGTTAATGCTACTTGCAATGATGAATCCATCCCAA 273
|||||||||||||||||||||||||||||| |||||| | |||||| |||| ||| |||
Sbjct 169 AAAGTTTCAGTCTCAGGTGGTTCACAGTTATTGCTACGCGTAATGATAAATCTATCTCAA 228
Query 274 TTTCGATAACCTCTACTGAGGCATCCAAATGTTGAACGGAAAAGAAGAGCCTAAGCAGAA 333
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 229 TTTCGATAACCTCTACTGAGGCATCCAAATGTTGAACGGAAAGGAAGAGCCTAAGCAGAA 288
Query 334 GAAAGGTTGGTCAGAGTCGCTGCTAGAATTTCGGTCAGGGTTTGGGGAAAAGATGAAAGT 393
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 289 GAAAGGTTGGTCAGAGTCGCTGCTGGAATTTCGGTCAGGGTTTGGGGAAAAGATGAAAGT 348
Query 394 TGTGTCGAAGAAACGTTGGAAATCTCTTGGTCCTCTTCATCTGAAAAGCAAATCAGTTGC 453
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 349 TGTGTCGAAGAAACGTTGGAAATCTCTTGGACCTCTTCATCTGAAAAGCAAATCAGTCGC 408
Query 454 ACGGTTTTGCTTCTTTTCGAAGTTGAAGTCAAACAACCATGGTCCAGGCCGTGCACCAGT 513
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 409 ACGGTTTTGCTTCTTTTCGAAATTGAAGTCAAACAACCATGGTCCAGGCCGTGCACCAGT 468
Query 514 GTATCTCAATGTTTATGACTTGACTCCTATTAACGGATATATCTATTGGGCAGGCCTTGG 573
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 469 CTATCTCAATGTTTATGACTTGACTCCTATTAACGGATATATCTATTGGGTAGGCCTTGG 528
Query 574 TATATTTCACTCTGGTGTAGAAGTTCATGGAGTAGAGTATGCTTTTGGTGCCCATGATTA 633
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 529 TATATTTCACTCTGGTGTAGAAGTTCATGGAGTAGAATATGCTTTTGGTGCCCATGATTA 588
Query 634 TGCAACGAGTGGTGTTTTTGAGGTTGAACCAAGGCAATGCCCGGGCTTCAAGTTCAAGAA 693
|||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||
Sbjct 589 TGCAACGAGTGGTGTTTTTGAGGTGGAACCACGGCAGTGCCCGGGTTTCAAGTTCAAGAA 648
Query 694 ATCGATATTCATTGGAACCACGAATTTAAACCCAACACAAGTGAGAGAGTTTATGGAAGA 753
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 649 ATCGATATTCATTGGAACCACAAATTTAAACCCAACACAAGTGAGAGAGTTTATGGAGGA 708
Query 754 CATGGCTTGCAGTTACTACGGGAATATGTATCACTTGATTGTTAAGAACTGCAACCATTT 813
|||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 709 CATGGCTTGCAGTTACTATGGTAATATGTATCACTTGATTGTAAAGAACTGCAACCATTT 768
Query 814 CTGCCAGGACGTTTGCTACAAGCTTACCGGGAAAAAGATCCCAAAATGGGTGAATCGGCT 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 CTGCCAGGACGTTTGCTACAAGCTTACCGGGAAAAAGATCCCAAAATGGGTGAATCGGCT 828
Query 874 TGCACAAATAGGTTCTGTGTGCAGCTGCATACTTCCCGAGTCCCTCAAGATAACAGCGGT 933
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 CGCACAAATAGGTTCTGTGTGCAGCTGCATACTTCCCGAGTCCCTCAAGATAACAGCGGT 888
Query 934 CTGCCACGATCCAGACGGGCAAATCCCGGAGGAAGAAAACGAAAAGAGAAGTCTTAGAAG 993
||||| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 889 TTGCCATGATCCAGACGGACAAATTCCAGAGGAAGAAAACGAAAAGAGAAGTCTTAGAAG 948
Query 994 CTCATTCAGCTGTTTATCATCCATCTCCATGAGACAAAAACAGCTTTCAACATCATCATT 1053
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 949 CTCATTCAGCTGTTTATCCTCCATCTCCATGAGACAAAAACAGCTTTCGACATCATCATT 1008
Query 1054 GTTCCTACAATCACCTCTCAGAGGCTGCTTACCTCCTTGGCAACTCAAACGCTCAAAATC 1113
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1009 GTTCCTACAATCACCTCTCAGAGGCTGCTTACCTCCATGGCAACTGAAACGCTCAAAATC 1068
Query 1114 TAACAGCAGCTCCTTGAAAGAAAGGTAGACAT 1145
|||||| | ||||||||||||||||||||||
Sbjct 1069 TAACAGTGGTTCCTTGAAAGAAAGGTAGACAT 1100
Score = 287 bits (155), Expect = 2e-76
Identities = 189/205 (92%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 1198 CGATTTATCCTTCTTCTATCTTTGTAA-TGGAGTTCGAAAACAGATTTCCCGCGCCATCG 1256
||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1101 CGATTTATCTTTCTTCTATCTTTGTAAGAGGAGTTCGAAAACAGATTTCCCGGGCCATCG 1160
Query 1257 CTTT-TCATTTGATTTTAACAGGCTTTCATAAGCCATTCTTCATCTTCTTTCTGTTTGTA 1315
|||| | |||| |||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1161 CTTTCTTATTTCATTTTAACAGGCTTTCATAAGCCATTCTTCTTCTTCTCTCTGTTTGTA 1220
Query 1316 TTGCTTCCAAATTTGAATCTTTTCTCATTTTCAAAATCATGTATTGCATCAACGCTGTTT 1375
||||||||||||||| |||||||||||||| |||||| |||||||||||||| ||||||
Sbjct 1221 TTGCTTCCAAATTTGGATCTTTTCTCATTT--AAAATCTTGTATTGCATCAACTCTGTTT 1278
Query 1376 ATATCTAAACTAGCTCTCTTAGTTC 1400
||||||||| ||||| |||||||||
Sbjct 1279 ATATCTAAATTAGCTTTCTTAGTTC 1303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52450267365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5