BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47750.1
Length=904
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473916 jgi|Araly1|473916|fgenesh2_kg.1__3870__AT1G47750.1 1216 0.0
> Ahg473916 jgi|Araly1|473916|fgenesh2_kg.1__3870__AT1G47750.1
Length=870
Score = 1216 bits (658), Expect = 0.0
Identities = 744/786 (95%), Gaps = 4/786 (1%)
Strand=Plus/Plus
Query 1 AATTGAAAAAGCTCCATCTCCTCCAATGGCTACGAAAGCTCCAGAGAAAATCACCAAACC 60
||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||
Sbjct 1 AATTGAAAAAGCTCCATCTCCTCCAATGGCTGCAAAAGGTCCAGAGAAAATCACCAAACC 60
Query 61 AAAAGACAGAGATTTCCTAAATCATCTCGAAACATATCTCTCCAAAAGAGATGGTGTAGA 120
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 61 CAAAGACAGAGATTTCCTAAACCATCTCGAAACATACCTCTCCAAAAGAGATGGCGTAGA 120
Query 121 CAAACTCCTGAAA-ATCTCTCGTTACGCAACAAAAATCATCCTCGCATCATCACTAATCC 179
||||||||| ||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 121 CAAACTCCT-AAAGATCTCTCGTTACGCAACCAAAATCATCCTCGCATCATCTCTAATCC 179
Query 180 CAGAAACCAGATCCATAATCCCCCGACTCAAAAGCTTCGAATCAAGCGTCGGAGTCAGTC 239
||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 180 CAGAATCCAGATCCATAATTCCCCGTCTCAAAAGCTTCGAATCAAGCGTCGGAGTCAGTC 239
Query 240 GCAAAGCCTTCCGTCTCGGAAAATTCGTACAAGACATCAACGCATTAAGATCCTCACGAT 299
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 240 GCAAAGCCTTCCGTCTCGGAAAATTCGTACAAGACATCAACGCTTTAAGATCTTCACGAT 299
Query 300 GGGATTCAAATCACGAGCTCGTCTTACTCATAATCGCGTACGGTGGTGAAGGATTATACT 359
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 300 GGGATTCAAATCACGAGCTCGTATTACTCCTAATCGCGTACGGTGGTGAAGGATTATACT 359
Query 360 ATTTCGTTGAACAATTCATATGGTTAACGAAATCAGGACTGATCGATGCGAAACATTCGA 419
||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 360 ATTTCGTCGAACAATTCATTTGGTTAACGAAATCAGGATTGATCGATGCGAAACATTCGA 419
Query 420 AATGGCTTCAGAAGATTAGTGCTTGGGCTGAATTGGTTGGTTATGTAGGAAGTGTTTCGA 479
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 420 AATGGCTTCAGAAGATCAGTGCTTGGGCTGAATTGGTTGGTTATGTTGGAAGTGTTTCGA 479
Query 480 TTAAGATTAGGGATTTGAGGAAATTGAATGATGAAGAGAGTTGTGTTGCTTCGACGATCG 539
| |||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 480 TAAAGATTAGGGATTTGAGGAAATTGAATGATGAAGAGAGGTGTGTTGCTTCGACAATTG 539
Query 540 AGATCTCGGTTTCGAGAGGATTAGCTTGTGATGGTGAAGATGAGAAGATGAAGATGATTA 599
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 540 AGATCTCGGTTTCGAGAGGATTAGCTTGTGATGGAGATGATGAGAAGATGAAGATGATTA 599
Query 600 AGGAGAAGAAGACATTGAAGGTTTTATCTATTTTGCAGGATCTTG-CTGATGGTTTGATG 658
|||||||||||||||||||||||||||| |||||||||||| ||| ||||||| ||||||
Sbjct 600 AGGAGAAGAAGACATTGAAGGTTTTATCGATTTTGCAGGAT-TTGGCTGATGGATTGATG 658
Query 659 ACGATTGCTGATATTCGTGATGGTAAGGGAGTGTTATCGGCTCCTAATGTGATATCTTCT 718
||| |||| ||| |||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 659 ACGGTTGCAGATGTTCGGGATGGTAAGGGAGTGTTATCGGCTCCGAATGTGATTTCTTCT 718
Query 719 GCAGGTTTGTTTTCTGCTATTGTTAGTACTCATAAGAACTGGATCTCTTGTTGATGATCA 778
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
Sbjct 719 GCAGGTTTGTTTTCGGCGATTGTTAGTACTCATAAGAACTGGATCTCTTGTTGATGATGA 778
Query 779 TGATGA 784
||||||
Sbjct 779 TGATGA 784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33510044043
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5