BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47760.1
Length=555
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314222 jgi|Araly1|314222|fgenesh1_pm.C_scaffold_1003002 671 0.0
Ahg923086 jgi|Araly1|923086|scaffold_104367.1 558 1e-158
> Ahg314222 jgi|Araly1|314222|fgenesh1_pm.C_scaffold_1003002
Length=552
Score = 671 bits (363), Expect = 0.0
Identities = 472/525 (90%), Gaps = 6/525 (1%)
Strand=Plus/Plus
Query 1 ATGGGTCGTAGAAAAATAGAGATAAAATTTATTGAAGATAGCATCGAAAGGAAAGCGACG 60
||||||||||| ||||||||||||||| ||||||||||| || | ||||||||||||||
Sbjct 1 ATGGGTCGTAGCAAAATAGAGATAAAACGTATTGAAGATATCACCAAAAGGAAAGCGACG 60
Query 61 TTTTCAAGACGCCGAAATGGCATTTTTAAGAAGGCTGATGAACTCGCGAAGTTGTGTAAT 120
|||| |||||||||||| | |||||||||||||| |||| |||||| ||| ||||||||
Sbjct 61 TTTTTAAGACGCCGAAAAAGTATTTTTAAGAAGGCCGATGCACTCGCAAAGCTGTGTAAT 120
Query 121 GTAG-AGATTGCTGTCTTGGTCATCTCCCCCACTAATATACCATACACATACGGTTATCC 179
|| | || ||||||||||||||||||||||||| |||||||| |||||||||||| ||||
Sbjct 121 GTGGAAG-TTGCTGTCTTGGTCATCTCCCCCACAAATATACCGTACACATACGGTAATCC 179
Query 180 ATGCTTCAACGATGTGGTTGAGCGTATTCAAAATCCTAGTGCTTCGTCCAAACTCAG-GA 238
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
Sbjct 180 ATGCTTCAACGATGTGGTTGAGCGTATCCAAAATCCTAGTGCTTCGTCCAAACTC-GATA 238
Query 239 GTCTCATGAAAGAATTGGAACAAATCAAAGAGTTTCAGGAGGATTTGAGGAAGAAACAGC 298
|||||||||||||||||||||||||||||||| || |||||| ||| ||||||| || |
Sbjct 239 GTCTCATGAAAGAATTGGAACAAATCAAAGAGCTTGAGGAGGTTTTAAGGAAGAGGCAAC 298
Query 299 AAAGAAACCTTGAAAAGTCCAATATGAAAGAGAATGTAGATCTGAAATTGGAGGACTTAG 358
||| ||||| |||||||||||||||||| | || ||| ||| ||||||||||||||||||
Sbjct 299 AAAAAAACCGTGAAAAGTCCAATATGAAGGGGATTGTTGATTTGAAATTGGAGGACTTAG 358
Query 359 TTGCTTTCAAGGCGAAACTCGAGGCCT-ATCAAGCAGGTTTAAAGAGGAAACATGTAGAG 417
|||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 359 TTGCTTTCAAGGGGAAACTCGAGG-CTCATCAAGCAGGTTTAAAGAGGAAACATGTAGAG 417
Query 418 ATGGAGGATTTGTCTTCTCCATCGATACTCTCAAAGAATACAAAGAATAAGATGATGAGG 477
|||||||||||||||||||||||||| |||||||||||||| ||||| |||| || |||
Sbjct 418 ATGGAGGATTTGTCTTCTCCATCGATGCTCTCAAAGAATACGAAGAAGAAGAAGACAAGG 477
Query 478 ACCGAGTATTCGTCTGGACAGAGCAAAGGAATGTATGAGTTTCGG 522
||||||| ||| ||||||||||||| || ||||||||| |||||
Sbjct 478 ACCGAGTCTTCTTCTGGACAGAGCAGAGAAATGTATGAACTTCGG 522
> Ahg923086 jgi|Araly1|923086|scaffold_104367.1
Length=568
Score = 558 bits (302), Expect = 1e-158
Identities = 455/528 (86%), Gaps = 13/528 (2%)
Strand=Plus/Plus
Query 1 ATGGGTCGTAGAAAAATAGAGATAAAATTTATTGAAGATAGCATCGAAAGGAAAGCGACG 60
||||||| | ||||||||||||||||| ||||||| |||||||||||||||| ||||||
Sbjct 21 ATGGGTCCTCGAAAAATAGAGATAAAACGTATTGAAAATAGCATCGAAAGGAATGCGACG 80
Query 61 TTTTC-AAGACGCCGAAATGGCATTTTTAAGAAGGCTGATGAACTCGCGAAGTTGTGTAA 119
|||| ||||| |||| ||| ||||||||||||||| |||| |||||| ||| ||| | |
Sbjct 81 -TTTCTAAGACTCCGAGATGACATTTTTAAGAAGGCCGATGCACTCGCAAAGCTGTATCA 139
Query 120 TGTAG-AGATTGCTGTCTTGGTCATCTCCCCCACTAATATACCATACACATACGGTTATC 178
||| | || ||||||||||||| ||||||||||| ||| |||| || ||||||||| |||
Sbjct 140 TGTGGAAG-TTGCTGTCTTGGTGATCTCCCCCACAAATGTACCGTATACATACGGTAATC 198
Query 179 CATGCTTCAACGATGTGGTTGAGCGTATTCAAAATCCTAGTGCTTCGTCCAAACTCAG-G 237
|||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
Sbjct 199 CATGCTTCAACGATGTGGTTGAGCATATTCAAAATCCTAGTGCTTCGTCCAAAATC-GTT 257
Query 238 AGTCTCATGAAAGAATTGGAACAAATCAAAGAGTTTCAGGAGGATTT-GAGGAAGAAACA 296
||||||||||||||||||||| ||||||||| || |||||| ||| || ||||| ||
Sbjct 258 AGTCTCATGAAAGAATTGGAATGTATCAAAGAGCTTGAGGAGG-TTTGGACGAAGAGGCA 316
Query 297 GCAAAGAAACCTTGAAAAGTCCAATATGAAAGAGAATGTAGATCTGAAATTGGAGGACTT 356
|||||||||| |||||||||||||||||| | || ||| ||||||||| ||||||||||
Sbjct 317 ACAAAGAAACCATGAAAAGTCCAATATGAAGGGGATTGTTGATCTGAAAGTGGAGGACTT 376
Query 357 AGTTGCTTTCAAGGCGAAACTCGAGGCCTATCAAGCAGGTTTAAAGAGGAAACA-TGTAG 415
|||||||||||||| ||||||||| || | ||||| ||||||||||| |||| | |||||
Sbjct 377 AGTTGCTTTCAAGGGGAAACTCGAAGCTTTTCAAGTAGGTTTAAAGA-GAAAAATTGTAG 435
Query 416 AGATGGAGGATTTGTCTTCTCCATCGATACTCTCAAAGAATACAAAGAATAAGATGATGA 475
|||||||||||||||||||||||||||| |||||||||| |||||||| | || || |
Sbjct 436 AGATGGAGGATTTGTCTTCTCCATCGATGGTCTCAAAGAAAACAAAGAAGA-GAAGACAA 494
Query 476 GGACCGAGTATTCGTCTGGACAGAGCAAAGGAA-TGTATGAGTTTCGG 522
||||||||| || || |||||||||| |||| |||||| | |||||
Sbjct 495 GGACCGAGTTTTATTCCGGACAGAGCAG-GGAAATGTATGTGCTTCGG 541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20260617759
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5