BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47765.1
Length=1158
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314223 jgi|Araly1|314223|fgenesh1_pm.C_scaffold_1003003 460 8e-129
Ahg923084 jgi|Araly1|923084|scaffold_104365.1 346 2e-94
Ahg474209 jgi|Araly1|474209|fgenesh2_kg.1__4163__AT1G50870.1 137 1e-31
> Ahg314223 jgi|Araly1|314223|fgenesh1_pm.C_scaffold_1003003
Length=1092
Score = 460 bits (249), Expect = 8e-129
Identities = 628/796 (79%), Gaps = 85/796 (11%)
Strand=Plus/Plus
Query 12 AAAACAGAAGAAGAGAAAAGTAGTCTCGAAAAGTAAAAGAACACAA--T-CAAAATCAGC 68
|||| || ||||||||||| | |||| ||||| |||||||||||| | ||||| || |
Sbjct 11 AAAA-AG-AGAAGAGAAAA-T--TCTCCAAAAGAAAAAGAACACAATCTCCAAAACCAAC 65
Query 69 TTCGTCCCTTCCTCTGGATCTAACCTCGGAGATACTCTTAAGGCTACCTGAGAAATCTAT 128
||||||| ||||||| ||||||| ||| |||||||||||||||||||||||||||||| |
Sbjct 66 TTCGTCCTTTCCTCTAGATCTAATCTCAGAGATACTCTTAAGGCTACCTGAGAAATCTGT 125
Query 129 TGCGAGGTTTCGTTGTGTGTCGAAGCTTTGGTTATCAATCACCACCGATCCATATTTCAT 188
||||||||||||||| ||||||||||||||||||||||||| || | | | |
Sbjct 126 TGCGAGGTTTCGTTGCGTGTCGAAGCTTTGGTTATCAATCA-CA---A--C-----T-AG 173
Query 189 CAACTTGTTCGAAACTCGGTCCCCACGGCCGAGTCTTTTAG-TTTGCTTCA-TAGAAAAT 246
|| || | | || || | |||||||||||| | ||||||||| | ||| ||
Sbjct 174 GAA--TG-T----AGTC-GT-GGGGCTGCCGAGTCTTTT-GCTTTGCTTCACT-GAATAT 222
Query 247 GACAAGTTGTTTGTGTCCTCAATTCCGCAACATCTTCATTCACTTCAGAATTCTAA-AAG 305
|| ||||||||||| ||||| ||||||||||||| ||||||||||||| |||| || ||
Sbjct 223 GAAAAGTTGTTTGTTTCCTCGATTCCGCAACATCATCATTCACTTCAGGATTCGAACAA- 281
Query 306 GTCTTACTCTTCTTCTCAG-C------TCTTTATC-GTT---A-T-C-A-T--AT-GGAA 347
|||||||||||||||||| | || ||||| || | | | | | || ||
Sbjct 282 ATCTTACTCTTCTTCTCAGCCTATTGATCGTTATCATTTGAAATTCCTATTACATAATAA 341
Query 348 -TT--ACCAGAAGG-A--TGT--A-GGCTTGATCTGCTTT-AAGACATCAAAAATGCCGA 397
|| || | || | ||| | ||||||||||||||| |||| |||| || ||| |
Sbjct 342 CTTCCCCCTTACGGAATCTGTCCATGGCTTGATCTGCTTTCAAGA-ATCAGCAACGCCAA 400
Query 398 TAGTTTGGAACCCTAGCAAGAGACAGTTG-ATAACTTTACCCATACCCAGATTA-AGCTG 455
||||||| |||||||||||||| ||| || |||||||||| | ||| ||| | |||||
Sbjct 401 TAGTTTGTAACCCTAGCAAGAGGCAG-TGCTTAACTTTACCTAAACCTAGA-AAGAGCTG 458
Query 456 GAATAATATAATAGTTTTTC-TAGGATACGAT-CCAGTTGAAGGTAAACACAAAGTAATG 513
| | ||| || ||||| ||||||| ||| ||| | |||||||||||||||||||||
Sbjct 459 GGAGCGGCTAACAG-TTTTCTTAGGATATGATCCCA-TCGAAGGTAAACACAAAGTAATG 516
Query 514 TGCTTGCCTTTTAGAAGAAGTTCTGATGTATGTCAAGTGTTAACATTAGGACCAGCTCAA 573
||||||||||||||||||||||||||||| |||| || |||||||| ||||||||||||
Sbjct 517 TGCTTGCCTTTTAGAAGAAGTTCTGATGTGTGTCGGGTTTTAACATTGGGACCAGCTCAA 576
Query 574 GAATTCTCATGGATAACGGTAAAAACGTA--CCATAAGCATTGTTCTGACTATCAGAGTT 631
|||| | ||||| ||| || ||||| || || || ||||||||||||||| || | ||
Sbjct 577 GAAT-C--ATGGAGAACTGTCAAAAC-TAAACC-TACGCATTGTTCTGACTACCATACTT 631
Query 632 CTGGTCGATGCATCAAGGGGGTTGTATATTATATAGC-TCAAGTTTATCATACACATGCT 690
| ||||| ||||||||||||||||||||||||||||| || ||||||| |||| ||| |
Sbjct 632 CGGGTCGGTGCATCAAGGGGGTTGTATATTATATAGCCTCT-GTTTATCGTACAGATGTT 690
Query 691 TGGGTTTTAATGTGTTTTGATGTCAGATCTGAAAAATTCGACATGATAAAATTAC-ATGC 749
|||||| ||||| | |||||||||||||||||||| || | ||||| | |||| || |
Sbjct 691 TGGGTTGTAATGAGCTTTGATGTCAGATCTGAAAAGTTTGGTATGATTCAGTTACCAT-C 749
Query 750 GGATATTT-ATAGGGA 764
||| ||| |||||||
Sbjct 750 TGAT-TTTCATAGGGA 764
> Ahg923084 jgi|Araly1|923084|scaffold_104365.1
Length=1180
Score = 346 bits (187), Expect = 2e-94
Identities = 557/727 (77%), Gaps = 59/727 (8%)
Strand=Plus/Plus
Query 364 GGCTTGATCTGCTTT-AAGACATCAAAAATGCCGATAGTTTGGAACCCTAGCAAGAGACA 422
||||||||||||||| ||| |||| || ||| || |||| |||||||||||| ||| |
Sbjct 408 GGCTTGATCTGCTTTCAAG-TATCAGGAACGCCAATTGTTTCGAACCCTAGCAAAAGAGA 466
Query 423 GTTGA-TAACTTTACCCATACCCAGATTAAGCTGGAATAATATAATAGTTTTTCTAGGAT 481
||| | || | ||||||| |||| | ||| | | ||| || |||| ||||||
Sbjct 467 GTT-ATTACCCTTACCCAAACCCCCA--AAG--AG-CTTGTATGCTAACTTTT-TAGGAT 519
Query 482 ACGATCCAGTTGAAGGTAAACACAAAGTAATGTGCTTGCCTT-TTAGAAGAAGTTCTGAT 540
||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||
Sbjct 520 ACGATCCAGTTGAAGGTAAACACAAAGTAATGTGCATGCCTCATTC-AATAAGTTCTGAT 578
Query 541 GTATGTCAAGTGTTAACATTAGGACC-AGCTCAAGAATTCTCATGGATAACGGTAAAAAC 599
|| || ||||| ||||| || | | ||||||| ||| ||||| |||||| || ||
Sbjct 579 GTGCGTTGGGTGTTTACATTGGGGTCGA-CTCAAGA-TTC--ATGGAGAACGGTCAACAC 634
Query 600 GTACCATAAGCATTGTTCTGACTATCAG-AGTTCTGGTCGATGCATCAAGGGGGTTGTAT 658
|||||| |||| ||||||||| || | || ||| ||||||||||||||||| |||
Sbjct 635 CAACCATAGGCATCCTTCTGACTA-CAATACTTTTGGGCGATGCATCAAGGGGGTCATAT 693
Query 659 ATTATATAGCTCA-AGTTTATCATACACA-TGCTTGGGTTTTAATGTGT-TTTGATGTCA 715
||||| ||| | | ||||| ||| | || || |||| |||| | ||||||||||
Sbjct 694 ATTATGTAGAGGATA-TTTATAATA-AGGGTGTTTTGGTTATAAT-TACATTTGATGTCA 750
Query 716 GATCTGAAAAATTCGACATGATAAAATTAC-ATGCGGATAT-TT--ATAGGGAAATTCTC 771
||| ||||||||| | |||||| | |||| || ||||||| || ||||||| || ||
Sbjct 751 GATTTGAAAAATTTGGTATGATAGATTTACCAT-CGGATATATTTTATAGGGACATGCTG 809
Query 772 ATAACTTATGAGGGGAGGAT-AGCTTGTGTTGA-AAAACGTACCACGAAGGATGATTACA 829
|||| |||| ||||||| || ||||| |||||| |||| || |||| ||| || ||
Sbjct 810 ATAAATTATAAGGGGAG-ATTAGCTTTTGTTGATAAAAA-TAAAACGA-GGAAGAG--CA 864
Query 830 TAGCATTGTGCATTTTGGAGGACGCaaaaaaaGACAAGTGGTCG--A-GTAAAGATATTC 886
||||||| ||||||||||| ||||| ||| |||| ||||| | |||||||| |||
Sbjct 865 ---CATTGTGGATTTTGGAGGATGCAAAGAAACACAAATGGTCATCAAGTAAAGATTTTC 921
Query 887 TTGCACCTTTTGGTCACTTTGATGAA-AGATT-AAGAACCTTTTTCCAAC-TAAAAGGTT 943
||| ||||||| || ||| |||| || || || || || | |||| ||| |||||||||
Sbjct 922 TTGAACCTTTTAGTTACTATGAT-AAGAGTTTGAA-AAGCGATTTC-AACCTAAAAGGTT 978
Query 944 GCACTCATGATGGTGAATTTATTT-TCGTATCT-TCCACGTTTCGA-AAGATGGATT--A 998
|||||||| |||||| |||||| | | || ||||| |||| | || || ||| |
Sbjct 979 TCACTCATGCTGGTGAGCTTATTTAT-GC-TCCATCCACATTTC-ACAA-ATC-ATTTTA 1033
Query 999 TATTTTATTTTTTGATCCGGTGaaaaaaaCCTTTAGAAGATTCGAACTTAAAGAAATTGC 1058
||||||||||| |||| |||||| | ||| |||||||||||||||| |||||| ||| |
Sbjct 1034 TATTTTATTTTGTGATTCGGTGAGAGAAAGCTTTAGAAGATTCGAATTTAAAGGAATCAC 1093
Query 1059 AGACGAC 1065
||| |||
Sbjct 1094 AGATGAC 1100
> Ahg474209 jgi|Araly1|474209|fgenesh2_kg.1__4163__AT1G50870.1
Length=1137
Score = 137 bits (74), Expect = 1e-31
Identities = 152/189 (80%), Gaps = 7/189 (4%)
Strand=Plus/Plus
Query 77 TTCCTCTGGATCTAACCTCGGAGATACTCTTAAGGCTACCTGAGAAATCTATTGCGAGGT 136
||||||| ||||||| || |||||||||||||| ||||||| |||||| || |||||
Sbjct 92 TTCCTCTCGATCTAATCTTAGAGATACTCTTAAGACTACCTGTTAAATCTGTTTTGAGGT 151
Query 137 TTCGTTGTGTGTCGAAGCTTTGGTTATCAATCACCACCGATCCATATTTCATCAACTTGT 196
|||||||||| |||||||| ||||||||||||||||||||||||||||| | |||| |
Sbjct 152 TTCGTTGTGTTTCGAAGCTCTGGTTATCAATCACCACCGATCCATATTTTACCAACGCAT 211
Query 197 TCGAAACTCGGTCC-C--CACGGCCGAGTCTTTTAGT-TTGCTTCATA-GAAAATGACAA 251
|| | |||| ||| | |||| || |||||| || | || ||||| | | | | |||
Sbjct 212 ACGGAGCTCGATCCTCAACACGACCAAGTCTTCTAATGTT-CTTCAAAAGCAGGGG-CAA 269
Query 252 GTTGTTTGT 260
|||||||||
Sbjct 270 GTTGTTTGT 278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43193264961
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5