BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G47765.1 Length=1158 Score E Sequences producing significant alignments: (Bits) Value Ahg314223 jgi|Araly1|314223|fgenesh1_pm.C_scaffold_1003003 460 8e-129 Ahg923084 jgi|Araly1|923084|scaffold_104365.1 346 2e-94 Ahg474209 jgi|Araly1|474209|fgenesh2_kg.1__4163__AT1G50870.1 137 1e-31 > Ahg314223 jgi|Araly1|314223|fgenesh1_pm.C_scaffold_1003003 Length=1092 Score = 460 bits (249), Expect = 8e-129 Identities = 628/796 (79%), Gaps = 85/796 (11%) Strand=Plus/Plus Query 12 AAAACAGAAGAAGAGAAAAGTAGTCTCGAAAAGTAAAAGAACACAA--T-CAAAATCAGC 68 |||| || ||||||||||| | |||| ||||| |||||||||||| | ||||| || | Sbjct 11 AAAA-AG-AGAAGAGAAAA-T--TCTCCAAAAGAAAAAGAACACAATCTCCAAAACCAAC 65 Query 69 TTCGTCCCTTCCTCTGGATCTAACCTCGGAGATACTCTTAAGGCTACCTGAGAAATCTAT 128 ||||||| ||||||| ||||||| ||| |||||||||||||||||||||||||||||| | Sbjct 66 TTCGTCCTTTCCTCTAGATCTAATCTCAGAGATACTCTTAAGGCTACCTGAGAAATCTGT 125 Query 129 TGCGAGGTTTCGTTGTGTGTCGAAGCTTTGGTTATCAATCACCACCGATCCATATTTCAT 188 ||||||||||||||| ||||||||||||||||||||||||| || | | | | Sbjct 126 TGCGAGGTTTCGTTGCGTGTCGAAGCTTTGGTTATCAATCA-CA---A--C-----T-AG 173 Query 189 CAACTTGTTCGAAACTCGGTCCCCACGGCCGAGTCTTTTAG-TTTGCTTCA-TAGAAAAT 246 || || | | || || | |||||||||||| | ||||||||| | ||| || Sbjct 174 GAA--TG-T----AGTC-GT-GGGGCTGCCGAGTCTTTT-GCTTTGCTTCACT-GAATAT 222 Query 247 GACAAGTTGTTTGTGTCCTCAATTCCGCAACATCTTCATTCACTTCAGAATTCTAA-AAG 305 || ||||||||||| ||||| ||||||||||||| ||||||||||||| |||| || || Sbjct 223 GAAAAGTTGTTTGTTTCCTCGATTCCGCAACATCATCATTCACTTCAGGATTCGAACAA- 281 Query 306 GTCTTACTCTTCTTCTCAG-C------TCTTTATC-GTT---A-T-C-A-T--AT-GGAA 347 |||||||||||||||||| | || ||||| || | | | | | || || Sbjct 282 ATCTTACTCTTCTTCTCAGCCTATTGATCGTTATCATTTGAAATTCCTATTACATAATAA 341 Query 348 -TT--ACCAGAAGG-A--TGT--A-GGCTTGATCTGCTTT-AAGACATCAAAAATGCCGA 397 || || | || | ||| | ||||||||||||||| |||| |||| || ||| | Sbjct 342 CTTCCCCCTTACGGAATCTGTCCATGGCTTGATCTGCTTTCAAGA-ATCAGCAACGCCAA 400 Query 398 TAGTTTGGAACCCTAGCAAGAGACAGTTG-ATAACTTTACCCATACCCAGATTA-AGCTG 455 ||||||| |||||||||||||| ||| || |||||||||| | ||| ||| | ||||| Sbjct 401 TAGTTTGTAACCCTAGCAAGAGGCAG-TGCTTAACTTTACCTAAACCTAGA-AAGAGCTG 458 Query 456 GAATAATATAATAGTTTTTC-TAGGATACGAT-CCAGTTGAAGGTAAACACAAAGTAATG 513 | | ||| || ||||| ||||||| ||| ||| | ||||||||||||||||||||| Sbjct 459 GGAGCGGCTAACAG-TTTTCTTAGGATATGATCCCA-TCGAAGGTAAACACAAAGTAATG 516 Query 514 TGCTTGCCTTTTAGAAGAAGTTCTGATGTATGTCAAGTGTTAACATTAGGACCAGCTCAA 573 ||||||||||||||||||||||||||||| |||| || |||||||| |||||||||||| Sbjct 517 TGCTTGCCTTTTAGAAGAAGTTCTGATGTGTGTCGGGTTTTAACATTGGGACCAGCTCAA 576 Query 574 GAATTCTCATGGATAACGGTAAAAACGTA--CCATAAGCATTGTTCTGACTATCAGAGTT 631 |||| | ||||| ||| || ||||| || || || ||||||||||||||| || | || Sbjct 577 GAAT-C--ATGGAGAACTGTCAAAAC-TAAACC-TACGCATTGTTCTGACTACCATACTT 631 Query 632 CTGGTCGATGCATCAAGGGGGTTGTATATTATATAGC-TCAAGTTTATCATACACATGCT 690 | ||||| ||||||||||||||||||||||||||||| || ||||||| |||| ||| | Sbjct 632 CGGGTCGGTGCATCAAGGGGGTTGTATATTATATAGCCTCT-GTTTATCGTACAGATGTT 690 Query 691 TGGGTTTTAATGTGTTTTGATGTCAGATCTGAAAAATTCGACATGATAAAATTAC-ATGC 749 |||||| ||||| | |||||||||||||||||||| || | ||||| | |||| || | Sbjct 691 TGGGTTGTAATGAGCTTTGATGTCAGATCTGAAAAGTTTGGTATGATTCAGTTACCAT-C 749 Query 750 GGATATTT-ATAGGGA 764 ||| ||| ||||||| Sbjct 750 TGAT-TTTCATAGGGA 764 > Ahg923084 jgi|Araly1|923084|scaffold_104365.1 Length=1180 Score = 346 bits (187), Expect = 2e-94 Identities = 557/727 (77%), Gaps = 59/727 (8%) Strand=Plus/Plus Query 364 GGCTTGATCTGCTTT-AAGACATCAAAAATGCCGATAGTTTGGAACCCTAGCAAGAGACA 422 ||||||||||||||| ||| |||| || ||| || |||| |||||||||||| ||| | Sbjct 408 GGCTTGATCTGCTTTCAAG-TATCAGGAACGCCAATTGTTTCGAACCCTAGCAAAAGAGA 466 Query 423 GTTGA-TAACTTTACCCATACCCAGATTAAGCTGGAATAATATAATAGTTTTTCTAGGAT 481 ||| | || | ||||||| |||| | ||| | | ||| || |||| |||||| Sbjct 467 GTT-ATTACCCTTACCCAAACCCCCA--AAG--AG-CTTGTATGCTAACTTTT-TAGGAT 519 Query 482 ACGATCCAGTTGAAGGTAAACACAAAGTAATGTGCTTGCCTT-TTAGAAGAAGTTCTGAT 540 ||||||||||||||||||||||||||||||||||| ||||| || || |||||||||| Sbjct 520 ACGATCCAGTTGAAGGTAAACACAAAGTAATGTGCATGCCTCATTC-AATAAGTTCTGAT 578 Query 541 GTATGTCAAGTGTTAACATTAGGACC-AGCTCAAGAATTCTCATGGATAACGGTAAAAAC 599 || || ||||| ||||| || | | ||||||| ||| ||||| |||||| || || Sbjct 579 GTGCGTTGGGTGTTTACATTGGGGTCGA-CTCAAGA-TTC--ATGGAGAACGGTCAACAC 634 Query 600 GTACCATAAGCATTGTTCTGACTATCAG-AGTTCTGGTCGATGCATCAAGGGGGTTGTAT 658 |||||| |||| ||||||||| || | || ||| ||||||||||||||||| ||| Sbjct 635 CAACCATAGGCATCCTTCTGACTA-CAATACTTTTGGGCGATGCATCAAGGGGGTCATAT 693 Query 659 ATTATATAGCTCA-AGTTTATCATACACA-TGCTTGGGTTTTAATGTGT-TTTGATGTCA 715 ||||| ||| | | ||||| ||| | || || |||| |||| | |||||||||| Sbjct 694 ATTATGTAGAGGATA-TTTATAATA-AGGGTGTTTTGGTTATAAT-TACATTTGATGTCA 750 Query 716 GATCTGAAAAATTCGACATGATAAAATTAC-ATGCGGATAT-TT--ATAGGGAAATTCTC 771 ||| ||||||||| | |||||| | |||| || ||||||| || ||||||| || || Sbjct 751 GATTTGAAAAATTTGGTATGATAGATTTACCAT-CGGATATATTTTATAGGGACATGCTG 809 Query 772 ATAACTTATGAGGGGAGGAT-AGCTTGTGTTGA-AAAACGTACCACGAAGGATGATTACA 829 |||| |||| ||||||| || ||||| |||||| |||| || |||| ||| || || Sbjct 810 ATAAATTATAAGGGGAG-ATTAGCTTTTGTTGATAAAAA-TAAAACGA-GGAAGAG--CA 864 Query 830 TAGCATTGTGCATTTTGGAGGACGCaaaaaaaGACAAGTGGTCG--A-GTAAAGATATTC 886 ||||||| ||||||||||| ||||| ||| |||| ||||| | |||||||| ||| Sbjct 865 ---CATTGTGGATTTTGGAGGATGCAAAGAAACACAAATGGTCATCAAGTAAAGATTTTC 921 Query 887 TTGCACCTTTTGGTCACTTTGATGAA-AGATT-AAGAACCTTTTTCCAAC-TAAAAGGTT 943 ||| ||||||| || ||| |||| || || || || || | |||| ||| ||||||||| Sbjct 922 TTGAACCTTTTAGTTACTATGAT-AAGAGTTTGAA-AAGCGATTTC-AACCTAAAAGGTT 978 Query 944 GCACTCATGATGGTGAATTTATTT-TCGTATCT-TCCACGTTTCGA-AAGATGGATT--A 998 |||||||| |||||| |||||| | | || ||||| |||| | || || ||| | Sbjct 979 TCACTCATGCTGGTGAGCTTATTTAT-GC-TCCATCCACATTTC-ACAA-ATC-ATTTTA 1033 Query 999 TATTTTATTTTTTGATCCGGTGaaaaaaaCCTTTAGAAGATTCGAACTTAAAGAAATTGC 1058 ||||||||||| |||| |||||| | ||| |||||||||||||||| |||||| ||| | Sbjct 1034 TATTTTATTTTGTGATTCGGTGAGAGAAAGCTTTAGAAGATTCGAATTTAAAGGAATCAC 1093 Query 1059 AGACGAC 1065 ||| ||| Sbjct 1094 AGATGAC 1100 > Ahg474209 jgi|Araly1|474209|fgenesh2_kg.1__4163__AT1G50870.1 Length=1137 Score = 137 bits (74), Expect = 1e-31 Identities = 152/189 (80%), Gaps = 7/189 (4%) Strand=Plus/Plus Query 77 TTCCTCTGGATCTAACCTCGGAGATACTCTTAAGGCTACCTGAGAAATCTATTGCGAGGT 136 ||||||| ||||||| || |||||||||||||| ||||||| |||||| || ||||| Sbjct 92 TTCCTCTCGATCTAATCTTAGAGATACTCTTAAGACTACCTGTTAAATCTGTTTTGAGGT 151 Query 137 TTCGTTGTGTGTCGAAGCTTTGGTTATCAATCACCACCGATCCATATTTCATCAACTTGT 196 |||||||||| |||||||| ||||||||||||||||||||||||||||| | |||| | Sbjct 152 TTCGTTGTGTTTCGAAGCTCTGGTTATCAATCACCACCGATCCATATTTTACCAACGCAT 211 Query 197 TCGAAACTCGGTCC-C--CACGGCCGAGTCTTTTAGT-TTGCTTCATA-GAAAATGACAA 251 || | |||| ||| | |||| || |||||| || | || ||||| | | | | ||| Sbjct 212 ACGGAGCTCGATCCTCAACACGACCAAGTCTTCTAATGTT-CTTCAAAAGCAGGGG-CAA 269 Query 252 GTTGTTTGT 260 ||||||||| Sbjct 270 GTTGTTTGT 278 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43193264961 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5