BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G47770.1

Length=618
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg331550 jgi|Araly1|331550|fgenesh1_pm.C_scaffold_8000893           117    1e-25
  Ahg893687 jgi|Araly1|893687|Al_scaffold_0006_1683                    113    1e-24
  Ahg926111 jgi|Araly1|926111|scaffold_201672.1                        108    6e-23
  Ahg921962 jgi|Araly1|921962|scaffold_103243.1                        108    6e-23


> Ahg331550 jgi|Araly1|331550|fgenesh1_pm.C_scaffold_8000893
Length=948

 Score =  117 bits (63),  Expect = 1e-25
 Identities = 98/113 (87%), Gaps = 10/113 (9%)
 Strand=Plus/Plus

Query  366  TGGAAATTTGGGTCATGGAGACACAAGGATGGTCCAAGATTTGTTTTTATGTGATGGAGG  425
            |||| |||||||| |||||||||||||||||||||||||  | ||| | | | |   |||
Sbjct  686  TGGATATTTGGGTTATGGAGACACAAGGATGGTCCAAGA--T-TTTCT-T-T-A---AGG  736

Query  426  GTTCAATAAAATGGCGCATCTTGGAGGCTACT-ATGGTGGTGAGATCGTTTTG  477
            ||||||||||||||||||||||||| |||||| ||| ||||||||||||||||
Sbjct  737  GTTCAATAAAATGGCGCATCTTGGATGCTACTCATGATGGTGAGATCGTTTTG  789


> Ahg893687 jgi|Araly1|893687|Al_scaffold_0006_1683
Length=1920

 Score =  113 bits (61),  Expect = 1e-24
 Identities = 91/105 (87%), Gaps = 4/105 (4%)
 Strand=Plus/Plus

Query  513   AGCCGTCTATGACCA-CACGTTGGTCGAGGATTTCGCGAAGCCCGTCAACATGGTCGAAT  571
             ||||||||||||||| | |||||||||||||||||||||||||||||  |||||||||||
Sbjct  1716  AGCCGTCTATGACCATC-CGTTGGTCGAGGATTTCGCGAAGCCCGTCTTCATGGTCGAAT  1774

Query  572   CCGTCAA-GGCTTCAACAGATTTTTCAAACCTTGTGAACtttttt  615
             ||| | | ||| |||| ||||| ||||||| |||  ||| |||||
Sbjct  1775  CCG-CTATGGCCTCAAAAGATTCTTCAAACTTTGCAAACCTTTTT  1818


> Ahg926111 jgi|Araly1|926111|scaffold_201672.1
Length=1166

 Score =  108 bits (58),  Expect = 6e-23
 Identities = 90/105 (86%), Gaps = 4/105 (4%)
 Strand=Plus/Plus

Query  513   AGCCGTCTATGACCA-CACGTTGGTCGAGGATTTCGCGAAGCCCGTCAACATGGTCGAAT  571
             |||||| |||||||| | |||||||||||||||||||||||||||||  |||||||||||
Sbjct  941   AGCCGTATATGACCATC-CGTTGGTCGAGGATTTCGCGAAGCCCGTCTTCATGGTCGAAT  999

Query  572   CCGTCAA-GGCTTCAACAGATTTTTCAAACCTTGTGAACtttttt  615
             ||| | | ||| |||| ||||| ||||||| |||  ||| |||||
Sbjct  1000  CCG-CTATGGCCTCAAAAGATTCTTCAAACTTTGCAAACCTTTTT  1043


> Ahg921962 jgi|Araly1|921962|scaffold_103243.1
Length=346

 Score =  108 bits (58),  Expect = 6e-23
 Identities = 82/93 (88%), Gaps = 4/93 (4%)
 Strand=Plus/Plus

Query  513  AGCCGTCTATGACCA-CACGTTGGTCGAGGATTTCGCGAAGCCCGTCAACATGGTCGAAT  571
            ||||||||||||||| | |||||||||||||||||||||||||||||  |||||||||||
Sbjct  131  AGCCGTCTATGACCATC-CGTTGGTCGAGGATTTCGCGAAGCCCGTCTTCATGGTCGAAT  189

Query  572  CCGTCAAGG-CTTCAACAGATTTTTCAAACCTT  603
            ||| | | | | |||| ||||| ||||||||||
Sbjct  190  CCG-CTATGTCCTCAAAAGATTCTTCAAACCTT  221



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22606889781


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5