BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47786.1
Length=561
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473918 jgi|Araly1|473918|fgenesh2_kg.1__3872__AT1G47786.1 771 0.0
> Ahg473918 jgi|Araly1|473918|fgenesh2_kg.1__3872__AT1G47786.1
Length=561
Score = 771 bits (417), Expect = 0.0
Identities = 516/564 (91%), Gaps = 6/564 (1%)
Strand=Plus/Plus
Query 1 ATGTTTCTTGCATACTTTTCAAAGTTGTTGGACTATATTCTCTCCTATATTTATTACGTG 60
||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1 ATGTTTCTTCCATACTTTTCAAAGTTGTTGGACTATTTTCTCTCATATATTTATTACGTG 60
Query 61 GAACTGATTAATGAATCTGCGTATGTTAAACTTTTTACAGCTCGTAGAAATGTAGGGGGT 120
|||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| |||||
Sbjct 61 GAACTGATTAATGAATTTGCCTATGTTAAACTTTTTACAGCTAGTAGAAATGTAAGGGGT 120
Query 121 ATTAAATTTGAAGACGTTCAATCTTTTGGACCCATAGGAACTCATAAGGCCACTATAGTC 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTAAATTTGAAGACGTTCTATCTTTTGGACCCATAGGAACTCATAAGGCCACTATAGTC 180
Query 181 TGGCTGCATGATATCGGCGAGACAAGCGCAAATTCGGTTCGATTTGCGAGACAGTTGGGT 240
||||| ||||||||||||||||||||||| ||||| |||||||||||||||| |||||
Sbjct 181 TGGCTACATGATATCGGCGAGACAAGCGCTAATTCAACTCGATTTGCGAGACAGATGGGT 240
Query 241 CTTCGAAATATTAAGTGGATTTGTCCAACTGCTCCTAGACGCCCCGTTACTATCTTAGGT 300
||| ||| |||||||||||||| |||||||||||| ||||||| ||||||||||||||
Sbjct 241 CTTAAAAACATTAAGTGGATTTGCCCAACTGCTCCTTCACGCCCCATTACTATCTTAGGT 300
Query 301 GGAATGGAAACCAATGCATGGTTCGATATTGCAGAAATTTCTGAAAACATGCAAGATGAT 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 GGAATGGAAACCAATGCATGGTTCGATATCGCAGAAATTTCTGAAAACATGCAAGATGAT 360
Query 361 GAGGTGTCATTACATCATGCAGCTTTATCTATTGCTAACCTTTTTTCTGATCATGCTTCC 420
| || ||||||| ||||||| |||||||| |||||||||||||| ||||| | | ||
Sbjct 361 GTGGAGTCATTAAATCATGCTGCTTTATCCATTGCTAACCTTTTATCTGAAGAA-C--CC 417
Query 421 CCAAATA---TAGGAGGTATGGGCATGGGTGCAGCGCAAGCTCTCTACCTTGCGAGTAAG 477
||||| | |||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 418 CCAAACAGAATAGGAGGTATCGGCTTGGGTGCAGCGCAAGCTCTCTACCTTGCGAGTAAG 477
Query 478 AGTTGCTATGACACTAATCAACGGCTTCAAATAAAGCCACGAGTTGTTATAGGGCTTAAA 537
|||| ||||||||||||||||||||||| |||| ||||||||||||||||||||| ||
Sbjct 478 GGTTGTTATGACACTAATCAACGGCTTCAGATAAGGCCACGAGTTGTTATAGGGCTCAAT 537
Query 538 GGATGGCTTCCTGGCTGGAGGTAG 561
|| |||||||||| ||||||||||
Sbjct 538 GGTTGGCTTCCTGTCTGGAGGTAG 561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20489551293
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5