BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47810.1
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913798 jgi|Araly1|913798|Al_scaffold_0001_4052 459 2e-128
> Ahg913798 jgi|Araly1|913798|Al_scaffold_0001_4052
Length=885
Score = 459 bits (248), Expect = 2e-128
Identities = 296/319 (93%), Gaps = 3/319 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGATACGGAGAAGAGTTTGCAATCTCTGG---ATCCAATTCCTGTTGACGTGTTG 57
|||||||| ||| |||||| | |||||||||||| |||||||||| ||||| |||||
Sbjct 1 ATGGCAGAGACGAAGAAGAATCTGCAATCTCTGGATCATCCAATTCCCATTGACATGTTG 60
Query 58 TTCGAGATCTTCTTAAACTTGCCAGCGAAATTTTTAGCCAGGTTTGTTTGTGTATCGAAG 117
||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||
Sbjct 61 TTCGAGATCTTCTTAAACTTGCCCGCGAAATCTTTAGCCAGGTTTGTTTGCGTATCGAAG 120
Query 118 TTATGGGCCAAAATCATCCGCAATCAAGATTTCATCAGATCCTTCTCGTTTCGATCATTC 177
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 121 CTATGGGCCAAAATCATCCGCAATCAAGATTTCATCAGATCCTTCTCGCTTCGATCATCC 180
Query 178 CGAGAGAATAAGCAACACCGTCTCCTTTTTGCTTTCAAAAACCAAATAAAAGGTTATCAA 237
| | |||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 181 CTAAAGAATAAGCAGCACCGCCTCCTCTTTGCTTTCAAAAACCAAATAAAAGGTTATCAA 240
Query 238 GAAAATTGGTACTTTTTCTCCAAATCAACTCATGTTTCAACTCCACTATATGAGCCAAAC 297
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 241 GAAAATTGGTACTTTTTCTCCAAATCAACTCATGTTTCAACTCCACTATTTGAGCCAAAC 300
Query 298 TCACTGGTTTTACCGGACC 316
| |||||||||||||||||
Sbjct 301 TTACTGGTTTTACCGGACC 319
Score = 449 bits (243), Expect = 1e-125
Identities = 263/273 (96%), Gaps = 0/273 (0%)
Strand=Plus/Plus
Query 315 CCAAAACATTAACAAATTTGAAGCTCTAGTTGGGGAGGAACCACCTGATTTTGAATCAAG 374
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 CCAAAACATTAACGAATTTGAAGCTCTAGTTGGGGAGGAACCACCTGATTTTGAATCAAG 410
Query 375 TACGGTGTGTCACTTGAAGAAAATGCGATACCAAAATCCTAGCTACGTCCATGGGTTGAT 434
|||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 411 TACGGTGTGTCATTTGAAGCAAATGCGATACCAAAAGCCTAGCTACGTCCATGGGTTGAT 470
Query 435 TAGCTTTTTATATGGGGAAGAACAAATCATATGTAATCCCAGCATAGGTAAGTCCATAAA 494
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 471 TAGCTTTTTATATGGGAAAGAACAAATCATATGTAATCCTAGCATAGGTAAGTCCATAAA 530
Query 495 CTTACCCACTTTGGGATCCAGTGAAACGATCATTGGAAGCTTTTTAGGATATGATCCTAT 554
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 531 CTTACCCACTTTGGAATCCAGTGAAACGATCATTGGAAGCTTTTTAGGATATGATCCAAT 590
Query 555 CCATGCACAATATAAAGTATTATGTTTGAACAA 587
||||||||||||||||||||| ||||||| |||
Sbjct 591 CCATGCACAATATAAAGTATTGTGTTTGACCAA 623
Score = 250 bits (135), Expect = 2e-65
Identities = 195/224 (87%), Gaps = 4/224 (2%)
Strand=Plus/Plus
Query 651 AATGATCCAATGCCCCACTCCTCACTATCCTGGAACCACCTCTGTGTGCATAGACGGTGT 710
||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 630 AATGATCCAATGCAGCAGTCCTCACTATCCTGGAACCATCTCTGTGTGCATAGACGGTGT 689
Query 711 TTTATATTACAGTGCTTCCAG-AGGTTTTACCATGCATGAACCATTAAACTTGGTGAGAT 769
|||||||||||||||||| || || |||||||||| ||||||||||| |||||||||||
Sbjct 690 TTTATATTACAGTGCTTCTAGTAG-TTTTACCATGGATGAACCATTATTCTTGGTGAGAT 748
Query 770 TTGATTTGAGGACTGAAAGTTTGGAAATTGCTTCTGTATTTCCCGAGGACTTTAAATCGT 829
||| ||||||| |||||||||||||| ||||||| ||||||||||| | || |||| |
Sbjct 749 TTGGTTTGAGGTCTGAAAGTTTGGAAGTTGCTTCCAAATTTCCCGAGGGCCTTGAATCAT 808
Query 830 CGGTTA-AACCTAGTTTGATAAACTACCGTGGAAAAGTAGCTGT 872
| | || || |||||||||||||| |||||||||||||||
Sbjct 809 CAAATCGAAT-TACTTTGATAAACTACCATGGAAAAGTAGCTGT 851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39304727427
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5