BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G47820.1

Length=511
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg473920 jgi|Araly1|473920|fgenesh2_kg.1__3874__AT1G47820.2         503    5e-142


> Ahg473920 jgi|Araly1|473920|fgenesh2_kg.1__3874__AT1G47820.2
Length=378

 Score =  503 bits (272),  Expect = 5e-142
 Identities = 302/316 (96%), Gaps = 3/316 (1%)
 Strand=Plus/Plus

Query  52   CTTTAGTTTTAATTTCAGGGTAGATATGGAGATTGAGAGTCACGTTTCAGTCCCTGGGAA  111
            ||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||
Sbjct  41   CTTTAGTTTTAATTTCAGGGTTGACATGGAGATTGAGAGTCACGATTCAGTCCCTGGGAA  100

Query  112  GAATCTAGTTAAAGTAGAGTTCAAGCTTGGGACAGAGAGCTACACAATTGATTCAATCAA  171
            ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||
Sbjct  101  GAATCTAGTTAAAGTCGAGTTCAAGCTTGGGACAGAGAGCTTCACAATTGATTCAAACAA  160

Query  172  GGGTGATACTGTATTGGACCAATTGGTTTCGATGAAAGAAGAAAGTATGAAGATACTTAA  231
            |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  161  GGGTAATACTGTATTGGATCAATTGGTTTCGATGAAAGAAGAAAGTATGAAGATACTTAA  220

Query  232  GGATTTTATCACAAAGCATAATGTTCCAgatgatgatgtccctgaccaaatcttgtctga  291
             ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  221  AGATTTTATCACAAAGCATAATGTTCAAGATGATGATGTCCCTGACCAAATCTTGTCTGA  280

Query  292  tgatgaagaaggtgatgatgatgatgCTTCTCCTGTAATATGTCCTGTGAAACCACCCAA  351
            ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |  ||
Sbjct  281  TGAAGAAGAAGGTGATGATGATGATGCTTCTCCTGTAATATGTCCTGTGAAACC-C--AA  337

Query  352  GAAGACAAAGATTTGA  367
            ||||||||||||||||
Sbjct  338  GAAGACAAAGATTTGA  353



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18581771843


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5