BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47830.1
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923098 jgi|Araly1|923098|scaffold_104379.1 774 0.0
> Ahg923098 jgi|Araly1|923098|scaffold_104379.1
Length=472
Score = 774 bits (419), Expect = 0.0
Identities = 454/471 (96%), Gaps = 2/471 (0%)
Strand=Plus/Plus
Query 118 TTCTCCATTAGATTTTGCAGAGAAAATGATCCGATTCATATTATTGCAGAACAGACAAGG 177
|||||||||||| ||| ||||| |||||||||| |||||||||||||||||||| |||||
Sbjct 1 TTCTCCATTAGA-TTTCCAGAG-AAATGATCCGTTTCATATTATTGCAGAACAGGCAAGG 58
Query 178 TAAGACTCGTCTAGCCAAATACTATGTCCCTCTCGAAGAATCCGAGAAACACAAAGTCGA 237
|||||||||||| |||||||||||||| |||||||||||||| |||||||| ||||| ||
Sbjct 59 TAAGACTCGTCTTGCCAAATACTATGTTCCTCTCGAAGAATCAGAGAAACATAAAGTTGA 118
Query 238 ATACGAGGTTCATAGATTAGTGGTGAATCGCGACGCCAAATTCACCAACTTCGTTGAGTT 297
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 119 ATACGAGGTTCATAGGTTAGTGGTGAATCGCGACGCGAAATTCACCAACTTCGTTGAGTT 178
Query 298 TAGAACACACAAGGTGATATACAGGCGTTATGCTGGATTGTTTTTCTCTGTGTGCGTGGA 357
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TAGAACGCACAAGGTGATATACAGGCGTTATGCTGGATTGTTTTTCTCTGTGTGCGTGGA 238
Query 358 TATAACCGACAATGAGTTGGCTTACTTGGAGAGTATCCATTTGTTTGTGGAGATATTGGA 417
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 239 TATAACCGACAATGAGTTGGCTTACCTGGAGAGTATCCATTTGTTTGTGGAGATATTGGA 298
Query 418 CCATTTCTTCAGCAATGTTTGTGAGCTAGATTTGGTGTTTAATTTCCACAAGGTGTACTT 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 299 CCATTTCTTCAGCAATGTTTGTGAGCTAGATTTGGTGTTTAATTTCCACAAGGTTTACTT 358
Query 478 GATACTCGATGAGTTCATTCTTGCTGGGGAGCTCCAAGAAACAAGCAAAAGGGCAATCAT 537
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GATACTCGATGAATTCATTCTTGCTGGGGAGCTCCAAGAAACAAGCAAAAGGGCAATCAT 418
Query 538 CGAAAGGATGTCAGAACTCGAGAAGCTACAGTGATGACGGTTAAGAATCAC 588
||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 419 CGAAAGGATGTCAGAACTCGAGAAGCTACAGTGATGACGGTTAGGAATCAC 469
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30269596098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5