BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47840.1
Length=1653
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314227 jgi|Araly1|314227|fgenesh1_pm.C_scaffold_1003007 2200 0.0
> Ahg314227 jgi|Araly1|314227|fgenesh1_pm.C_scaffold_1003007
Length=1476
Score = 2200 bits (1191), Expect = 0.0
Identities = 1392/1488 (94%), Gaps = 18/1488 (1%)
Strand=Plus/Plus
Query 36 ATGTCACTCATGTTTTCTTCCCCTGTCGTCACCCC-AGCACTCGGATCTTTCACCTTCTC 94
||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||
Sbjct 1 ATGTCACTCATGTTTTCTTCCCCTGTCGTCACCCCAACCA-TCGGATCTTTCACCTTCTC 59
Query 95 ATCTCGACCACGCTCCAATTACATCGTGATGTCCGCCGTCCGATCTAACTCTGCTTCGAC 154
|||||| |||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 60 ATCTCG---ACGCTCAAACTACATCGTGATGTCCGCCGTCCGATCTAACTCGGCTTCGAC 116
Query 155 GTGTCCTATACTGACCAAGTTTCAGAAAGACTGCGCCACTCCTACACCGTACCTACGCAA 214
||||||| |||| |||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 117 GTGTCCTGTACTAACCAAGTTTCAGAAGGACTGTGCCACTCCTACACCGTATCTACGCAA 176
Query 215 CGTAGCCAACGCCATTGCTGATGACATGCGAGATGGTCTAGCTGTTGAAGGAGGAGGAGA 274
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 177 CGTAGCCAACGCCATTGCTGATGACATGCGAGCTGGTCTAGCTGTTGAAGGAGGAGGAGA 236
Query 275 TCTCGAGATGATCTTGACTTTTGTTGACGCTTTGCCTTCTGGGAATGAGGAAGGGTTGTT 334
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 237 TCTCGATATGATCTTGACTTATGTTGACGCTTTGCCTTCTGGGAATGAGGAAGGGTTGTT 296
Query 335 CTATGCATTGGATTTAGGAGGTACAAATTTTCGGGTGCGTAGCGTGCAATTAGGAGGAAA 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CTATGCATTGGATTTAGGAGGTACAAATTTTCGGGTGCGTAGCGTGCAATTAGGAGGAAA 356
Query 395 GAAAGAGCGAGTCTTAGCTACCGAATCTGAACAAATATCTATTTCTCAAAAGCTTATGAT 454
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 357 GAAAAAGCGAGTCATAGCTACCGAATCTGAACAAATATCTATTCCTCAAAAGCTTATGAT 416
Query 455 TGGTACAAGTGAGGAGCT-TTTCGGGTTCATTGCTTCAAAGCTTGCAAATTTTGTTGCAA 513
||||||||| ||||| || ||| |||||||||||| |||||||||||| ||||||||||
Sbjct 417 TGGTACAAGAGAGGAACTCTTT-GGGTTCATTGCTGCAAAGCTTGCAAGCTTTGTTGCAA 475
Query 514 AGGAGAAGCC-AGGTCGGTTTCTTTTAGAAGAAGGGAGGAAAAGGGAGTTAGGGTTTACC 572
|||||||||| || |||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 476 AGGAGAAGCCGAG-TCGGTTTCGGTTAGAAGAAGGGAGGAAAAGGGAGATAGGGTTTACC 534
Query 573 TTTTCATTCCCTGTGAAGCAAACCTCTATTGATTCAGGCACATTAAGCAAGTGGACTAAA 632
||||||||||||||||||||||| ||||||||||| |||||| | | |||||||||||||
Sbjct 535 TTTTCATTCCCTGTGAAGCAAACTTCTATTGATTCTGGCACACTGATCAAGTGGACTAAA 594
Query 633 GGCTTTAAAGTGTCTGGAATGGAAGGAAAAAATGTGGTTGCTTGTTTAAATGAAGCTATG 692
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 595 GGCTTTAAAGTGTCTGGAATGGAAGGAAAAAACGTGGTTGCTTGTTTAAATAAAGCTATG 654
Query 693 GAAGCACATGGACTCGATATGCGAGTTTCTGCTCTTGTAAATGATGGAGTGGGAACATTA 752
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 655 GAAGCTCATGGACTCGACATGCGAGTTTCTGCTCTCGTAAATGATGGAGTGGGAACATTA 714
Query 753 GCTGGAGCAAGGTATTGGGATGAGGATGTGATGGTCGGTGTGATTCTTGGCACTGGGACC 812
|||||||||||||||| ||| |||||||||||| |||||||||||||||||||||| |||
Sbjct 715 GCTGGAGCAAGGTATTCGGAAGAGGATGTGATGATCGGTGTGATTCTTGGCACTGGAACC 774
Query 813 AATGCTTGTTATGTAGAACAGAAACATGCAATTCCTAAACTCCGAAGCAAATCTTCTTCT 872
||||||||||||||||| ||||| ||||||||||||||||||| |||||| |||||||||
Sbjct 775 AATGCTTGTTATGTAGAGCAGAAGCATGCAATTCCTAAACTCCAAAGCAATTCTTCTTCT 834
Query 873 GGAACAACGATCATAAACACTGAGTGGGGAGGGTTCTCTAAGATTCTTCCGCAAACCATT 932
|||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||
Sbjct 835 GGAACAACGATCATAAACACGGAGTGGGGAGGATTCTCTAAGGTTCTTCCGCAAACCATT 894
Query 933 TTTGACCTAGAGATGGATGAGACA-AGCCTGAATCCTGGTGAACATTTATATGAGAAGAT 991
||||||| ||||||||||| || | |||| ||||||||||||||||||||||||||||||
Sbjct 895 TTTGACCAAGAGATGGATGCGA-ATAGCCCGAATCCTGGTGAACATTTATATGAGAAGAT 953
Query 992 GATCTCAGGGATGTACCTTGGTGAAATTGTAAGGAGGGTTTTGCTCCATATGTGTGAAAC 1051
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 954 GATCTCAGGGATGTACCTTGGTGAAATTGTAAGAAGGGTTTTGCTCCAAATGTGTGAAAC 1013
Query 1052 TAGTGACTTGTTTGGACACTTCGCTCCTGCCAAACTCTCCACTCC-TTTGGCACTCAGGA 1110
|||||||||||| ||||| |||| ||||||||||||||||||||| |||| ||||||||
Sbjct 1014 TAGTGACTTGTTCGGACAATTCGTTCCTGCCAAACTCTCCACTCCCTTTGA-ACTCAGGA 1072
Query 1111 CCGAGCATCTATGCAAAATGCAAGAGGACAATACAGATGATCTTCGGGATG-TTGGATCA 1169
|||||||||||||| ||||||||| ||||| |||||||||||||| | | | ||||||||
Sbjct 1073 CCGAGCATCTATGCGAAATGCAAGCGGACACTACAGATGATCTTCAG-ACGGTTGGATCA 1131
Query 1170 ATCCTATACGACTTTTTAGATGTAGAGGCGAATATGAATGCAAGGAGGAGAGTGGTGGAA 1229
|||||||| || ||||||| |||||||| ||| |||| | |||||||||||| ||||||
Sbjct 1132 GTCCTATACAACATTTTAGAGGTAGAGGCAAATCTGAAGGAAAGGAGGAGAGTAGTGGAA 1191
Query 1230 GTGTGTGACACAGTAGTGAAACGCGGAGGGCGTCTAGCAGGAGCTGGTATAGTGGCAATT 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GTGTGTGACACAGTAGTGAAACGCGGAGGGCGTCTAGCAGGAGCTGGTATAGTGGCAATT 1251
Query 1290 CTGGAGAAGATTGAAAAAGATACCAAAAGAATGGGTTCAGGTAAAAGAACCGTTGTGGCT 1349
|||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1252 CTGGAGAAAATTGAAAAAGAGACCAAAAGAATGGGTTCTGGTAAAAGAACCGTTGTGGCT 1311
Query 1350 ATGGACGGTGCACTGTATGAGAAGTACCCACAATATCGACAGTATATGCAAGACGCACTA 1409
|||||||||||||| || |||||||||||||| |||||| ||||||||||||| ||||||
Sbjct 1312 ATGGACGGTGCACTATACGAGAAGTACCCACAGTATCGAGAGTATATGCAAGATGCACTA 1371
Query 1410 GTCGAGCTTCTTGGCCATAAGCTTGCAAGTCACGTTGCGATCAAACATACCAAAGACGTG 1469
||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1372 GTCGAGCTTCTTGGCGATAAGCT---AAGTCACATTGCGATCAAACATACCAAAGACGTG 1428
Query 1470 TCTGGGCTCGGTGCTGCTCTTTTGGCGGCCACTAACTCCATTTACTAG 1517
|||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1429 TCTGGGCTCGGTGCTGCTCTTTTGGCCGCCACTAACTCCATTTACTAG 1476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61972828615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5