BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47860.1
Length=9594
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913807 jgi|Araly1|913807|Al_scaffold_0001_4061 1037 0.0
Ahg314227 jgi|Araly1|314227|fgenesh1_pm.C_scaffold_1003007 311 7e-83
> Ahg913807 jgi|Araly1|913807|Al_scaffold_0001_4061
Length=1269
Score = 1037 bits (561), Expect = 0.0
Identities = 625/657 (95%), Gaps = 0/657 (0%)
Strand=Plus/Plus
Query 1838 GTGTCGGAGTTGGGGCCAGAGGATTCAGGGAGAAACATAGTGGACATCATCTTCAAATCT 1897
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 GTGTCAGAGTTAGGGCCAGAGGATTCAGGGAGAAACATAGTGGACATCATCTTCAAATCT 672
Query 1898 AGCTGGTTACGTAAAGACAGTCCCATCTACAAGATCGAACGGATATTAAAAGTCCACAAC 1957
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 673 AGCTGGTTACGTAAAGACAGTCCCATCTATAAGATCGAACGGATATTAAAAGTCCACAAC 732
Query 1958 ACTCAACGAACGATCCAACGGTTTGAAGATTGTCGCGACGCAGTCAAGTCCCATGCACAT 2017
|||||||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 733 ACTCAACGCACGATCCAACGGTTCGAAGATTGTCGTGACGCAGTCAAATCCCATGCACAT 792
Query 2018 GCCTCTACCAGAAAAGAGGCTCGGTCCGCCGCCGACGGCAACGAGCTTCTCCGCTTCCAC 2077
||||| |||||||||||| | || || ||||||||||||||||||||||| ||||||||
Sbjct 793 GCCTCCACCAGAAAAGAGCCACGATCTGCCGCCGACGGCAACGAGCTTCTTTGCTTCCAC 852
Query 2078 TGCACCACAGTTTCTTGCTCCCTCGGCTCACGCGGCTCGACCTCCATTTGCTCCGCCATC 2137
|||||||| ||||||||||||||||||||| |||| ||||||||||||||||| ||||||
Sbjct 853 TGCACCACCGTTTCTTGCTCCCTCGGCTCATGCGGTTCGACCTCCATTTGCTCGGCCATC 912
Query 2138 CCTGGCTGCCGCGTTTGCACCATTATCCGCCATGGCTTCCACGCCAAAACGGTACGTGTA 2197
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 913 CCTGGCTGCCGTGTTTGCACCATTATCCGCCACGGCTTCCACGCCAAAACGGTACGTGTA 972
Query 2198 GGCAATGGTGAAGGAAAAGAGGAGATTAAGGGCGTGAGGACCACTGCAAGCAGTGGAAGA 2257
|||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 973 GGCACCGGCGAAGGAAAAGAGGAGATCAAGGGCGTGAGGACCACTGCAAGCAGTGGAAGA 1032
Query 2258 GCACACGATGCGTTGAGGTGTTTTGACCAGCGGAGGGCGATGCTTGTTTGCCGTGTGATC 2317
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1033 GCACACGACGCGTTGAGGTGTTTTGACCAGCGGAGGGCGATGCTTGTCTGCCGCGTGATC 1092
Query 2318 GCGGGAAGAGTGAGGCGCGTGCAGAGTGATGTGCCGGAAGATGAAAGTGGTTCTGGCTCG 2377
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1093 GCGGGAAGAGTGAGGCGCGTGCAGAGTGATGTTCCGGAAGATGAAAGTGGTTCTGGCTCG 1152
Query 2378 TATGATTCGGTTGCGGGGGCCGCTGGGGTCTACACAAACCTTGACGACTTGGTTGTGTAT 2437
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1153 TATGATTCGGTTGCGGGGGCCGCTGGGGTCTACACAAGCCTCGACGACTTGGTTGTGTAT 1212
Query 2438 AATCCAAAAGCTATACTTCCTTGCTTTGTAGTTATCTACAAAGTCTCCGAGCCTTAA 2494
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1213 AATCCAAAAGCTATTCTTCCTTGCTTTGTGGTTATCTACAAAGTCTCCGAGCCTTAA 1269
Score = 726 bits (393), Expect = 0.0
Identities = 480/519 (92%), Gaps = 17/519 (3%)
Strand=Plus/Plus
Query 1 ATGGCTCCTCTCCCTTTCATACCGGAACAAACCCGTTCGCAAACGCGTTTATCTTCAGAC 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 ATGGCTCCTCTCCCTTTCATACCGGAACAAACCCATTCGCAAACGCGTTTATCTTCAGAC 60
Query 61 ACAAAGAAGAAGAACAGAAACAAGAAAACGTCCCAACCACCGCCT------CAAACGC-A 113
|||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
Sbjct 61 ACAAAGAAGAAGAACAGAAACAAGAAAACGTCCCAACCGCCGCCTCAAACGCAAACGCTA 120
Query 114 AA--AG-A--TAAAGCAGAAGACGGTACCATCAACATCATCATCGTCGTCATGGAGCCAG 168
|| || | |||||||||||| |||||| || |||| |||||||||||||||||||||
Sbjct 121 AAGCAGAAGCAAAAGCAGAAGACTGTACCAACATCATCTTCATCGTCGTCATGGAGCCAG 180
Query 169 ATAAAGAACCTTTTGAGTTGCAAACAAATCGAAGGGCCACGAGTGCACGAACCATCAAAG 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATAAAGAACCTTTTGAGTTGCAAACAAATCGAAGGGCCACGAGTGCACGAACCATCAAAG 240
Query 229 ATTACGTCATCATCTTGTGGCTCCTCTCTTTGTAAGTTTAGTGATGTTATTTACGGTAAT 288
||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||||||||
Sbjct 241 ATTACTTCATCATCTTGTGGCTCTTCTCTTTGTAAGTTTAGCGATGTTGTTTACGGTAAT 300
Query 289 GCCCGTGTGATTCACCGCTCCGATCACTC-CCCTGAGAGTAGCAATCTTGGACAAGATAC 347
|| || ||||||||||||||||||||||| ||| ||||||||||||||||| |||||| |
Sbjct 301 GCTCGCGTGATTCACCGCTCCGATCACTCGCCC-GAGAGTAGCAATCTTGGTCAAGATGC 359
Query 348 CCGGTTGTTGACCCGAAAACCCATTAGTACCCGTGGATCTTCTTCATCGGTTAGATCCAA 407
|||||||||||||||||||||| | | | | ||||||||||||| ||||||||||||||
Sbjct 360 CCGGTTGTTGACCCGAAAACCCGTCACT-C--GTGGATCTTCTTCGTCGGTTAGATCCAA 416
Query 408 CGGTTGTGGCGCTTACACGTCATATTCAACTTCCAAAGCTATGCACTTCAGAAACCTCTC 467
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 417 CGGTTGTGGCGCTTACACGTCGTATTCAACTTCTAAAGCTATGCACTTCAGAAACCTCTC 476
Query 468 AGGTTGCTATGAGTGTCACATGATTGTTGATCCAAGCAG 506
||||||||||||||| |||||||||||||||||||||||
Sbjct 477 AGGTTGCTATGAGTGCCACATGATTGTTGATCCAAGCAG 515
Score = 152 bits (82), Expect = 4e-35
Identities = 92/97 (95%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 629 TATCCAATAGCACCAAGAATATGTGCATGTCCACAGTGTGGGGAGGTCTTCCCTAAGCTT 688
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 517 TATCCAATAGCACCAAGAATATGTGCATGTCCACAGTGTGGGGAGGTTTTCCCTAAGCTT 576
Query 689 GAATCATTGGAGCATCATCAAGCAGTTCGTCACGCTG 725
||| | ||||| | |||||||||||||||||||||||
Sbjct 577 GAAACTTTGGAACTTCATCAAGCAGTTCGTCACGCTG 613
> Ahg314227 jgi|Araly1|314227|fgenesh1_pm.C_scaffold_1003007
Length=1476
Score = 311 bits (168), Expect = 7e-83
Identities = 219/244 (90%), Gaps = 1/244 (0%)
Strand=Plus/Plus
Query 9345 AGCTGGTATAGTTGCAATTGTGGAGAAGATTGAAGAAGAGACCAAAAGAATGGATTCAGG 9404
|||||||||||| |||||| ||||||| |||||| |||||||||||||||||| ||| ||
Sbjct 1233 AGCTGGTATAGTGGCAATTCTGGAGAAAATTGAAAAAGAGACCAAAAGAATGGGTTCTGG 1292
Query 9405 TAAAAGAACCGTTGTGGCTATGGACGGTTCACTCTACGAGAACTACCCACAGTATCAACA 9464
|||||||||||||||||||||||||||| |||| |||||||| ||||||||||||| | |
Sbjct 1293 TAAAAGAACCGTTGTGGCTATGGACGGTGCACTATACGAGAAGTACCCACAGTATCGAGA 1352
Query 9465 GTATATGGAAGAAGCACTAGTCGAGCTTCTTGGCGATAATCGAAGTTACATTGTGATCAT 9524
||||||| |||| |||||||||||||||||||||||||| | |||| |||||| |||||
Sbjct 1353 GTATATGCAAGATGCACTAGTCGAGCTTCTTGGCGATAAGCTAAGTCACATTGCGATCAA 1412
Query 9525 ACATGCCAAAGACGTATCTGGGCTTGGTGCTGCTCTTTTGGCTGCTACTAACTCTATTTA 9584
|||| |||||||||| |||||||| ||||||||||||||||| || |||||||| |||||
Sbjct 1413 ACATACCAAAGACGTGTCTGGGCTCGGTGCTGCTCTTTTGGCCGCCACTAACTCCATTTA 1472
Query 9585 -TAG 9587
|||
Sbjct 1473 CTAG 1476
Score = 182 bits (98), Expect = 6e-44
Identities = 122/133 (92%), Gaps = 3/133 (2%)
Strand=Plus/Plus
Query 7175 TTATATGAGAAGATGGTCTCAGGGATGTACCTTGGTGAAATTGTGAGGAGGGTTTTGCTC 7234
||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct 940 TTATATGAGAAGATGATCTCAGGGATGTACCTTGGTGAAATTGTAAGAAGGGTTTTGCTC 999
Query 7235 CAAATGTGTGAAACTAGTGACTTGTTCGGTCAATTCGTTCCTGGCGGCAATCTCTCCAAA 7294
||||||||||||||||||||||||||||| ||||||||||||| | ||| |||||||
Sbjct 1000 CAAATGTGTGAAACTAGTGACTTGTTCGGACAATTCGTTCCTG-C--CAAACTCTCCACT 1056
Query 7295 CCCTTTGCACTCA 7307
||||||| |||||
Sbjct 1057 CCCTTTGAACTCA 1069
Score = 154 bits (83), Expect = 1e-35
Identities = 101/109 (93%), Gaps = 4/109 (4%)
Strand=Plus/Plus
Query 6954 GATCATAAACACTGAGTGGGGAGGATTCTCTAAGGTTCTTCCGCAGACCATTTTTGACCA 7013
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 843 GATCATAAACACGGAGTGGGGAGGATTCTCTAAGGTTCTTCCGCAAACCATTTTTGACCA 902
Query 7014 AGAGATGGATGCGGAA-AGCCCGAATCGTGGTGAACATGTA-AT-AGAA 7059
||||||||||||| || |||||||||| |||||||||| || || ||||
Sbjct 903 AGAGATGGATGCG-AATAGCCCGAATCCTGGTGAACATTTATATGAGAA 950
Score = 154 bits (83), Expect = 1e-35
Identities = 87/89 (98%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 8031 AGGTAGAGGCAAATCTGCAGGAAAGGAGGAGAGTGGTGGAAGTGTGTGACACAGTAGTGA 8090
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1151 AGGTAGAGGCAAATCTGAAGGAAAGGAGGAGAGTAGTGGAAGTGTGTGACACAGTAGTGA 1210
Query 8091 AACGCGGAGGGCGTCTAGCAGGAGCTGGT 8119
|||||||||||||||||||||||||||||
Sbjct 1211 AACGCGGAGGGCGTCTAGCAGGAGCTGGT 1239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 363746202966
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5