BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47870.1
Length=1553
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314229 jgi|Araly1|314229|fgenesh1_pm.C_scaffold_1003009 1589 0.0
> Ahg314229 jgi|Araly1|314229|fgenesh1_pm.C_scaffold_1003009
Length=1248
Score = 1589 bits (860), Expect = 0.0
Identities = 960/1007 (95%), Gaps = 12/1007 (1%)
Strand=Plus/Plus
Query 150 ATGGCCGCGACATCAAACTCAGGCGAAGATCCGACTCTCTC-T-T-ACCATCACCGATCT 206
|||||||||||||||||||||||||||||||||||||| || | | |||| |||||||||
Sbjct 1 ATGGCCGCGACATCAAACTCAGGCGAAGATCCGACTCTTTCTTATCACCACCACCGATCT 60
Query 207 CCTTTTCGCTTCGAATTACTTCAATCTATCTCTTCCTCTGATCCTCGTTACTCTTCTCTA 266
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 CCTTTTCGCTTCGAATTACTTCAATCTATCTCTTCCTCTGATCCTCGTTACGCTTCTCTA 120
Query 267 ACTCCTTCTTCAACGAATCGACCTTTCTCAGTCTCTCAATCGCTTCCGAATTCACAACTG 326
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 121 ACTCCTTCTTCAACGAATCGACCTTTCTCAGTCTCTCAATCGCTTCCGAATTCTCAACAG 180
Query 327 TCTCCTCTAATTTCACCTCACTGGGACGATTCTTACTCTCAAATCACTCAGAAAGTTCAG 386
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTCCTCTAATTTCATCTCACTGGGACGATTCTTACTCTCAAATCACTCAGAAAGTTCAA 240
Query 387 AAGAGTAGAAAGAATCATCGAATTCAGCTTGGATCTATTGCCAACATGTCTGGAGGAGAA 446
||||||||||||||||||||||||||||| ||||||||||| |||||| || ||||||
Sbjct 241 AAGAGTAGAAAGAATCATCGAATTCAGCTGGGATCTATTGCAAACATGGCT---GGAGAA 297
Query 447 AGCATAGATATAGCTAAAGTAATAGTGAAACAAGAGTCGTCTCCTCAAAATGTTAAACGT 506
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 298 AGCATAGATATAGCTAAAGTAATAGTGAAACAAGAGTCGTCTCCTCAAGATATTAAACGT 357
Query 507 GTATACAACAAGTCAAAGGGTGGTACTAAACTGTTAAAGGCTGGGAAACGAATGGCGAAT 566
||||||||||||||||| | |||||||||| ||||||||| ||||||||||||||||||
Sbjct 358 GTATACAACAAGTCAAA--G-GGTACTAAACAGTTAAAGGCCGGGAAACGAATGGCGAAT 414
Query 567 GGCGAAGTGCAAAATGGTGGCTTAAATGGAGCTAGTATTAACTGCCGTTATGACAGTTCT 626
||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 415 GGCGAAGCACAAAATGGTGGCTTAAATGGAACTAGTATTAACTGCCGTTATGATAGTTCT 474
Query 627 TTAGGGTTGTTGACaaaaaaaTTCGTGAAGTTGATCCAGGAAGCTGAGGATGGAACACTT 686
|||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 475 TTAGGGTTATTGACAAAGAAATTCGTCAAGTTGATCCAGGAAGCTGAGGATGGAACACTT 534
Query 687 GACCTTAACTATTGTGCAGTTGTTTTGGAGGTACAAAAAAGAAGGATATATGATATTACA 746
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GATCTTAACTATTGTGCAGATGTTTTGGAGGTACAAAAAAGAAGGATATATGATATTACA 594
Query 747 AATGTCCTTGAAGGAATTGGATTGATAGAGAAAACTACAAAGAATCATATCCGCTGGAAG 806
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 595 AATGTCCTTGAAGGAATTGGATTGATAGAGAAAACTACAAAGAACCATATCCGCTGGAAG 654
Query 807 GGTGCTGACAATCTTGGACAAAAGGACCTGGGAGATCAAATTTCTAGGCTTAAGTCAGAA 866
|||||||| ||||||||||| ||||||||||||||||||||| | |||||||||||||||
Sbjct 655 GGTGCTGAAAATCTTGGACAGAAGGACCTGGGAGATCAAATTGCAAGGCTTAAGTCAGAA 714
Query 867 GTAGAGAGTATGCAATCTGAGGAAAGCAGGTTGGATGATCTTATAAGGGAACGACAAGAA 926
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 715 GTAGAAAGTATGCAATCTGAGGAAAGCAGGTTGGATGATCTTATAAGGGAAAGACAAGAA 774
Query 927 GCTCTCAGATCCTTGGAGGAAGATGACTACTGTAGAAGGTACATGTTTATGACGGAGGAA 986
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 775 GCTCTCAGATCCTTGGAGGAAGATGAATATTGTAGAAGGTACATGTTTATGACGGAGGAA 834
Query 987 GATATAACGAGTCTCCCACGGTTTCAGAACCAGACATTACTAGCAATTAAAGCTCCTACA 1046
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GATATAACAAGTCTCCCACGGTTTCAGAACCAGACATTACTAGCAATTAAAGCTCCTACA 894
Query 1047 GCTAGTTACATCGAAGTTCCAGATCCTGATGAGATGAGTTTTCCGCAAC-A--GTACCGG 1103
|||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||
Sbjct 895 GCTAGTTACATCGAAGTTCCAGATCCTGATGAGATGAGATTTCCGCAACGACAGTACCGG 954
Query 1104 ATGGTGATTAGGAGTAGAATGGGGCCGATTGATGTCTATCTTTTAAG 1150
||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 955 ATGGTGATTAGGAGTAGGATGGGGCCGATTGATGTCTATCTTTTAAG 1001
Score = 305 bits (165), Expect = 5e-82
Identities = 184/193 (95%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 1149 AGCAAATACAAAGGAGACAGTGCGGAAACAAGCGACAAGTTGGGTAATGAGTCTGATCAA 1208
||||||||||||||| |||||| ||||||||| |||||||||||| ||||||||||||||
Sbjct 1057 AGCAAATACAAAGGAAACAGTGGGGAAACAAGTGACAAGTTGGGTCATGAGTCTGATCAA 1116
Query 1209 AAAGCTCCAGT-TGGAGTAGACACTCCTTCCTTGAAAATAGTAACTTCAGATACTGATTT 1267
||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 AAAGCTCCA-TCTGGAGTGGACACTCCTTCCTTGAAAATAGTAACTTCAGATACTGATTT 1175
Query 1268 AAAAGCAGATTACTGGTTCGAGTCAGATGCAGAGGTGAGCCTCACAGATTTATGGAGCAA 1327
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 AAAAGCAGATTACTGGTTTGAGTCAGATGCAGAGGTGAGCCTCACAGATTTATGGAGCAA 1235
Query 1328 CTTCAACAGCTGA 1340
||||| |||||||
Sbjct 1236 CTTCAGCAGCTGA 1248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58163804115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5