BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G47880.1

Length=1103
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg923104 jgi|Araly1|923104|scaffold_104385.1                        230    2e-59
  Ahg923106 jgi|Araly1|923106|scaffold_104387.1                        126    3e-28


> Ahg923104 jgi|Araly1|923104|scaffold_104385.1
Length=364

 Score =  230 bits (124),  Expect = 2e-59
 Identities = 213/255 (84%), Gaps = 10/255 (4%)
 Strand=Plus/Plus

Query  817   TTTTTAC-ATGCCTCTATCAATTTAT-AATTCTTTTCTTCATCTACTTGCTCGAAACTTG  874
             ||||| | ||||| || || ||| || || |||||||||| |||||||||||||||||||
Sbjct  14    TTTTT-CGATGCCGCTGTCCATTGATGAA-TCTTTTCTTCCTCTACTTGCTCGAAACTTG  71

Query  875   AGAAACCTTAGAGAATTGGATATGAGTTTCGTAAACATTTATTCATAAATCTCCCATGAA  934
             |||||||||| |||| |||||||||| | ||||||||||| |||| ||||| |||| || 
Sbjct  72    AGAAACCTTAAAGAACTGGATATGAGCTCCGTAAACATTTCTTCAGAAATCCCCCACGAC  131

Query  935   TTTTCAAACATGTAGT-CTCTAAGATGGCTAAATCTTGA-AGACTGTAACCTATTTGGAG  992
             ||||||||||||| || ||||||| | |||||||||||  | |||| ||||| |||||||
Sbjct  132   TTTTCAAACATGT-GTTCTCTAAGTTTGCTAAATCTTGCCA-ACTGCAACCTGTTTGGAG  189

Query  993   AATTTCCAAGCAGTGTTCATCTGATACCCAGCTGAGAGTCCATTA-GATTGTACGAAAAT  1051
             ||||||||| |||||||  ||| |||||||| | | ||||||||| | ||| | | ||||
Sbjct  190   AATTTCCAAACAGTGTTTTTCTAATACCCAGTTTACAGTCCATTATG-TTGGATGGAAAT  248

Query  1052  CCAAACCTGATAGGC  1066
              |||| |||| ||||
Sbjct  249   TCAAATCTGAGAGGC  263


> Ahg923106 jgi|Araly1|923106|scaffold_104387.1
Length=254

 Score =  126 bits (68),  Expect = 3e-28
 Identities = 160/201 (80%), Gaps = 19/201 (9%)
 Strand=Plus/Plus

Query  757  TCCAACCAAGCTTCTTCAGCTAACCAAGTTGTTGTCTCTCCATCTTTCTTCTTTGGGCTA  816
            ||||||||||||||||||||||||||||||| |||||||| ||||||||| ||    || 
Sbjct  71   TCCAACCAAGCTTCTTCAGCTAACCAAGTTGGTGTCTCTCGATCTTTCTTATT----CT-  125

Query  817  T-TTTTACATGCCTCTATCAATTTATAATTCTTTTCTTCATCTACTTGCTCGAAACTTGA  875
            | ||||   | ||   ||| ||  | | | |||||||||  |||||||||| ||||||||
Sbjct  126  TCTTTT---T-CC---ATCGATG-A-A-T-CTTTTCTTCGGCTACTTGCTCAAAACTTGA  174

Query  876  GAAACCTTAGAGAATTGGATATGAGTTTCGTAAACATTTATTCATAAATCTCC-CATGAA  934
            | |||||||||||| ||||||||||||  ||||||||||  ||| |||| ||| | | | 
Sbjct  175  GGAACCTTAGAGAACTGGATATGAGTTGGGTAAACATTTCCTCAGAAAT-TCCACGTTAG  233

Query  935  TTTTCAAACATGTAGTCTCTA  955
            || |||| ||||  |||||||
Sbjct  234  TTGTCAAGCATGCGGTCTCTA  254



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41096504526


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5