BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G47890.1

Length=3060
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg923104 jgi|Araly1|923104|scaffold_104385.1                        261    2e-68
  Ahg924204 jgi|Araly1|924204|scaffold_105485.1                       78.7    2e-13
  Ahg477857 jgi|Araly1|477857|fgenesh2_kg.3__558__AT3G05660.1         60.2    9e-08


> Ahg923104 jgi|Araly1|923104|scaffold_104385.1
Length=364

 Score =  261 bits (141),  Expect = 2e-68
 Identities = 251/304 (83%), Gaps = 8/304 (3%)
 Strand=Plus/Plus

Query  637  TCCATTGATAAATCTTTTCTTCCTCTACTTGCTCGAAACTTGAGGAACCTTAGAGAACTA  696
            ||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||| 
Sbjct  30   TCCATTGATGAATCTTTTCTTCCTCTACTTGCTCGAAACTTGAGAAACCTTAAAGAACTG  89

Query  697  GATATGAGCTACGTAAAAATTTCTTCAGAAATCCCCGAGGAGTTTTCAAACATACGGTCT  756
            |||||||||| |||||| |||||||||||||||||| | || |||||||||||  | |||
Sbjct  90   GATATGAGCTCCGTAAACATTTCTTCAGAAATCCCCCACGACTTTTCAAACATGTGTTCT  149

Query  757  CTAAGATCT-CTAAATCTTAATGGCTGCAACCTATTTGGAGAATTTCCAAGCAGTATTCT  815
            ||||| | | |||||||||     ||||||||| |||||||||||||||| |||| || |
Sbjct  150  CTAAGTT-TGCTAAATCTTGCCAACTGCAACCTGTTTGGAGAATTTCCAAACAGTGTTTT  208

Query  816  TCTGATTCCCAACTTACAATCTATTGAC-TTAG--GGAACAATCCTAATCTGAGAGGCAA  872
            ||| || ||||  ||||| || ||| |  || |  |||| | ||  ||||||||||||||
Sbjct  209  TCTAATACCCAGTTTACAGTCCATT-ATGTTGGATGGAA-ATTCA-AATCTGAGAGGCAA  265

Query  873  TCTTCCCGTTTTTCATGAAAACAACTCTTTGCTAAAGTTGACCATTTTGTACACATCCTT  932
            ||||||| | || | |||||| |||||| ||||| |||||| ||||    ||||||| ||
Sbjct  266  TCTTCCCCTATTCCGTGAAAATAACTCTATGCTAGAGTTGAGCATTCACAACACATCTTT  325

Query  933  TTCA  936
            ||||
Sbjct  326  TTCA  329


> Ahg924204 jgi|Araly1|924204|scaffold_105485.1
Length=593

 Score = 78.7 bits (42),  Expect = 2e-13
 Identities = 52/57 (91%), Gaps = 0/57 (0%)
 Strand=Plus/Plus

Query  545  AAATTCCAATCAATCTTCTTCAGCTAACAAAGTTGGTGTCTCTCGATCTTTCTTCTA  601
            |||||||| || | || ||||||||||| ||||||||||||||||||||||||||||
Sbjct  149  AAATTCCAGTCGAGCTGCTTCAGCTAACTAAGTTGGTGTCTCTCGATCTTTCTTCTA  205


> Ahg477857 jgi|Araly1|477857|fgenesh2_kg.3__558__AT3G05660.1
Length=2832

 Score = 60.2 bits (32),  Expect = 9e-08
 Identities = 43/48 (90%), Gaps = 2/48 (4%)
 Strand=Plus/Plus

Query  1636  CTAGATC-TTTCCAACAACAAAATCAAAGGTCAAGTACCAGACTGGTT  1682
             ||||| | |||||||||||||||||||||||||||| || | ||||||
Sbjct  1297  CTAGA-CATTTCCAACAACAAAATCAAAGGTCAAGTGCCTGGCTGGTT  1343



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 115565803330


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5