BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G47915.1

Length=222
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg473927 jgi|Araly1|473927|fgenesh2_kg.1__3881__AT1G47915.1         294    1e-79
  Ahg473930 jgi|Araly1|473930|fgenesh2_kg.1__3884__AT1G47915.1         287    2e-77


> Ahg473927 jgi|Araly1|473927|fgenesh2_kg.1__3881__AT1G47915.1
Length=192

 Score =  294 bits (159),  Expect = 1e-79
 Identities = 181/192 (94%), Gaps = 0/192 (0%)
 Strand=Plus/Plus

Query  4    ATGAGAACTTCTCCTAGAGATTCGATAAGCAATTTGCCAGATGAGATACTTGGCAAAATC  63
            ||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1    ATGAGAAGTTCTGCTAGAGATTCGATAAGCAATTTGCCAGATGAGATTCTTGGCAAAATC  60

Query  64   TTGTCTTTGCTTCCGACAAAAGTGGCTGCTTCCACATCGGTTCTGTCCAAGAGGTGGAGG  123
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  61   TTGTCTTTGCTTCCGACAAAAGTGGCTGCTTCCACATCGATTCTGTCCAAGAGGTGGAGG  120

Query  124  AATCTGCTAGGTCTTGTAGACAACCTCTGCTTTGATGAGTCGGTGGTTGTTTATCCCAAC  183
            |||||||| ||||||||||||||||| || |||||||||||| ||||||| |||||||| 
Sbjct  121  AATCTGCTGGGTCTTGTAGACAACCTTTGTTTTGATGAGTCGATGGTTGTGTATCCCAAT  180

Query  184  AAAGAAGAAGCT  195
             |||||||||||
Sbjct  181  GAAGAAGAAGCT  192


> Ahg473930 jgi|Araly1|473930|fgenesh2_kg.1__3884__AT1G47915.1
Length=191

 Score =  287 bits (155),  Expect = 2e-77
 Identities = 179/191 (94%), Gaps = 0/191 (0%)
 Strand=Plus/Plus

Query  4    ATGAGAACTTCTCCTAGAGATTCGATAAGCAATTTGCCAGATGAGATACTTGGCAAAATC  63
            ||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  1    ATGAGAAGTTCTGCTAGAGATTCGATCAGCAATTTGCCAGATGAGATACTTGGCAAAATC  60

Query  64   TTGTCTTTGCTTCCGACAAAAGTGGCTGCTTCCACATCGGTTCTGTCCAAGAGGTGGAGG  123
            |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct  61   TTGTCTTTGCTTCCGACAAAAGTGGCTGCTTCGACATCTGTTCTGTCCAAGAGGTGGAGG  120

Query  124  AATCTGCTAGGTCTTGTAGACAACCTCTGCTTTGATGAGTCGGTGGTTGTTTATCCCAAC  183
            |||||||| ||||||||||||| ||| | ||||||||||||| ||||||| |||||||||
Sbjct  121  AATCTGCTGGGTCTTGTAGACACCCTTTCCTTTGATGAGTCGATGGTTGTGTATCCCAAC  180

Query  184  AAAGAAGAAGC  194
             ||||||||||
Sbjct  181  GAAGAAGAAGC  191



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7599463939


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5