BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47920.1
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336955 jgi|Araly1|336955|fgenesh1_pg.C_scaffold_1003520 357 1e-97
Ahg473928 jgi|Araly1|473928|fgenesh2_kg.1__3882__AT5G12450.1 213 2e-54
> Ahg336955 jgi|Araly1|336955|fgenesh1_pg.C_scaffold_1003520
Length=546
Score = 357 bits (193), Expect = 1e-97
Identities = 380/467 (81%), Gaps = 25/467 (5%)
Strand=Plus/Plus
Query 1 ATGGAACGTGGATTGTTGGAACTACACTTGCACGCCGA-A-TCA-T-TTTTATTTGTAGA 56
||||||||||| || |||||||||||||||||||| | | || | |||| | ||||
Sbjct 1 ATGGAACGTGGTTTATTGGAACTACACTTGCACGCATATAGACACTATTTT-GATATAGA 59
Query 57 GAGAGAGTTGTTCACGAGCAAGACACTGGTTAAGCTCACACTATCCGCTGGATATGAT-T 115
|| ||||||||| |||||||||||||||||||||||||||||||||| | ||||| | |
Sbjct 60 GACAGAGTTGTTGACGAGCAAGACACTGGTTAAGCTCACACTATCCGGTCTATATGCTAT 119
Query 116 TCGAAGCTGA-GCGTGTGTTTCTCCCTGCGCTCAAATCACTTTATCTCTTAACTGATTCC 174
| |||| | | | ||||||| ||||||||||||||||||||| ||| ||| | | ||
Sbjct 120 T-GAAG-TCAAGTATGTGTTTTTCCCTGCGCTCAAATCACTTTCTCTATTATCAGTTTTA 177
Query 175 GGGATTGATTATGACAACCATTGT-CGGCTCCTTGATGGCTGCCCTGCTTTGGAAGAGTT 233
||| |||||||||||||| ||||| | |||||||||||||| ||||| |||||||||||
Sbjct 178 GGGCTTGATTATGACAACTATTGTTCC-CTCCTTGATGGCTGTCCTGCGTTGGAAGAGTT 236
Query 234 ATTCATACGTGATGCTGATCATGATTG--TCCGCCATGTTGCGGTTCAGTC-GTGAAAAG 290
|| ||||||||||| ||||| | ||| | ||||| |||||||| | || ||||||||
Sbjct 237 ATACATACGTGATGATGATCTT--TTGGGTTCGCCACGTTGCGGTGC-GTTTGTGAAAAG 293
Query 291 TGCATCCATCAAGCGACTTGTGGTTTTGGTTAATCT-TCCAAACAAGAGAGAC-AGTCAC 348
|||||| |||||||||||||||||||| |||| | |||| | | | | || | ||||
Sbjct 294 TGCATCTATCAAGCGACTTGTGGTTTTTACTAAT-TGTCCAGATTATAAATACGA-TCAC 351
Query 349 GAT-TATGCTTATTTTGAAGCACCAAGTCTTGTGTACCTTGACTATTCTAGTTATGTCTA 407
|| ||| ||| |||||||||||||| ||||| ||||||||||| |||||||| ||||
Sbjct 352 GAAGTAT-CTTGTTTTGAAGCACCAAACCTTGTCTACCTTGACTACTCTAGTTACGTCTT 410
Query 408 CGAGACTTATCAG-ATTGTTGGTTTGGATTCGCTTGTCGAAGCCAGG 453
|| | |||||| || |||| ||||||||||||||| || ||||||
Sbjct 411 TGAAAAGTATCAGTAT-GTTGCTTTGGATTCGCTTGTTGAGGCCAGG 456
> Ahg473928 jgi|Araly1|473928|fgenesh2_kg.1__3882__AT5G12450.1
Length=195
Score = 213 bits (115), Expect = 2e-54
Identities = 173/199 (87%), Gaps = 11/199 (6%)
Strand=Plus/Plus
Query 949 GTGCTGGAGATTTCAAAGTA-CGATGGTTCTTTTCAAGAGCTGAAACAGATGGGACATTT 1007
||||| ||||||||| |||| || |||||||||| |||||||||||||||| |||||||
Sbjct 1 GTGCTAGAGATTTCAGAGTATGGA-GGTTCTTTTCTAGAGCTGAAACAGATGAGACATTT 59
Query 1008 ATTGGGCAAATTGGGATGTCTTGAATCTGTGAAAGTTGGTGTTCACGCGGAC-A--ACAA 1064
||||| || ||| |||||||||| ||||||||||||||||| | |||||| | ||||
Sbjct 60 CTTGGGGAAGTTGAAATGTCTTGAAACTGTGAAAGTTGGTGTTGATGCGGACAACGACAA 119
Query 1065 C-AC--TGAGTTCTTGCAAGCTAATCTGCTGGCTCTCCCCAGACTTTCATCAAAGTGCAA 1121
| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CAACAGTGAGTTCTTGCGAGCTAATCTGCTGGCTCTCCCCAGACTTTCATCAAAGTGCAA 179
Query 1122 CAATATCCAGTTCAGCTGA 1140
|| | || ||||| |||||
Sbjct 180 CA-T-TC-AGTTCGGCTGA 195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42507052455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5