BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47960.1
Length=1528
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923116 jgi|Araly1|923116|scaffold_104397.1 736 0.0
Ahg473927 jgi|Araly1|473927|fgenesh2_kg.1__3881__AT1G47915.1 252 7e-66
Ahg473930 jgi|Araly1|473930|fgenesh2_kg.1__3884__AT1G47915.1 246 3e-64
Ahg336955 jgi|Araly1|336955|fgenesh1_pg.C_scaffold_1003520 195 1e-48
Ahg933044 jgi|Araly1|933044|scaffold_401032.1 187 2e-46
> Ahg923116 jgi|Araly1|923116|scaffold_104397.1
Length=499
Score = 736 bits (398), Expect = 0.0
Identities = 433/450 (96%), Gaps = 2/450 (0%)
Strand=Plus/Plus
Query 148 tgatgatgatggtgatggtgatggtgagtgaAGGAAGTATAATAGAGCCA-ACATGTAAA 206
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 13 TGATGATGATGGTGATGGTGATGGTGAGTGAAGGAAGTATAATAGAG-CAGACATGTAAA 71
Query 207 GAGACACCAGACTTCAATCTTTGTGTGTCTCTCCTTAACTCCGATCCACGTGGTTCCTCT 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 GAGACACCAGACTTCAATCTTTGTGTGTCTCTCCTTAACTCCGATCCACGTGGTTCCTCT 131
Query 267 GCCGACACTTCTGGCCTCGCTCTCATCCTCATTGATAAAATCAAGGGCCTGGCAACAAAA 326
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 132 GCCGACACTTCTGGCCTCGCTCTCATCCTCATTGATAAAATCAAGGGACTGACAACAAAA 191
Query 327 ACTTTGAACGAGATCAACGGTCTATATAAGAAGAGACCAGAACTAAAACGGGCTTTGGAT 386
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 ACCTTGAACGAGATCAACGGTCTATATAAGAAGAGACCAGAACTAAAACGGGCTTTGGAC 251
Query 387 GAATGTAGTCGAAGATACAAAACGATCTTAAACGCTGATGTTCCCGAAGCCATTGAAGCT 446
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 252 GAATGTAGTCGGAGATACAAAACGATCTTATACGCTGATGTTCCCGAAGCCATTGAAGCT 311
Query 447 ATCTCTAAAGGAGTCCCCAAATTCGGCGAAGACGGTGTGATCGACGCCGGTGTCGAAGCT 506
|| ||||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 312 ATTTCTAAAGGAGTTCCGAAATTCGGCGAAGATGGTGTGATCGACGCCGGTGTCGAAGCT 371
Query 507 TCTGTTTGTCAAGGAGGGTTTAATGGGAGTTCTCCGTTGACTAGTTTGACTAAATCAATG 566
||||||||| ||||||||||||| |||| |||||||||||||||||||| |||||||||
Sbjct 372 TCTGTTTGTGAAGGAGGGTTTAAAGGGAAATCTCCGTTGACTAGTTTGACCAAATCAATG 431
Query 567 CAAAAAATCTCTAATGTGACTAGAGCCATT 596
||||||||||||||||||||||||||||||
Sbjct 432 CAAAAAATCTCTAATGTGACTAGAGCCATT 461
> Ahg473927 jgi|Araly1|473927|fgenesh2_kg.1__3881__AT1G47915.1
Length=192
Score = 252 bits (136), Expect = 7e-66
Identities = 173/191 (91%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 741 ATGAGAAGTGCTCCTCGGGATTCGATAAGCAGTTTGCCAGATGAGATACTTGGCAAAATC 800
||||||||| || || | ||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1 ATGAGAAGTTCTGCTAGAGATTCGATAAGCAATTTGCCAGATGAGATTCTTGGCAAAATC 60
Query 801 CTGTCTTTGATTCCGAC--AAGTGGCTGCTTCGACATCGGTTCTGTCCAAGAGGTGGAAG 858
|||||||| ||||||| ||||||||||||| |||||| |||||||||||||||||| |
Sbjct 61 TTGTCTTTGCTTCCGACAAAAGTGGCTGCTTCCACATCGATTCTGTCCAAGAGGTGGAGG 120
Query 859 AATCTGCTATGTCTTGTAGACAACCTTTGTTTTGATGAGTCGATGGTTGTTTATCCCAAC 918
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 AATCTGCTGGGTCTTGTAGACAACCTTTGTTTTGATGAGTCGATGGTTGTGTATCCCAAT 180
Query 919 GATGAAGAAGC 929
|| ||||||||
Sbjct 181 GAAGAAGAAGC 191
> Ahg473930 jgi|Araly1|473930|fgenesh2_kg.1__3884__AT1G47915.1
Length=191
Score = 246 bits (133), Expect = 3e-64
Identities = 172/191 (90%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 741 ATGAGAAGTGCTCCTCGGGATTCGATAAGCAGTTTGCCAGATGAGATACTTGGCAAAATC 800
||||||||| || || | |||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1 ATGAGAAGTTCTGCTAGAGATTCGATCAGCAATTTGCCAGATGAGATACTTGGCAAAATC 60
Query 801 CTGTCTTTGATTCCGACAA--GTGGCTGCTTCGACATCGGTTCTGTCCAAGAGGTGGAAG 858
|||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||| |
Sbjct 61 TTGTCTTTGCTTCCGACAAAAGTGGCTGCTTCGACATCTGTTCTGTCCAAGAGGTGGAGG 120
Query 859 AATCTGCTATGTCTTGTAGACAACCTTTGTTTTGATGAGTCGATGGTTGTTTATCCCAAC 918
|||||||| |||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 121 AATCTGCTGGGTCTTGTAGACACCCTTTCCTTTGATGAGTCGATGGTTGTGTATCCCAAC 180
Query 919 GATGAAGAAGC 929
|| ||||||||
Sbjct 181 GAAGAAGAAGC 191
> Ahg336955 jgi|Araly1|336955|fgenesh1_pg.C_scaffold_1003520
Length=546
Score = 195 bits (105), Expect = 1e-48
Identities = 173/205 (84%), Gaps = 7/205 (3%)
Strand=Plus/Plus
Query 1097 TGGAACGCGGTTTACTGGAACTACACTTGCACGCCAACCCCCG-CTCTAGTGTTAATATA 1155
||||||| |||||| |||||||||||||||||| | | | | ||| | || |||||
Sbjct 2 TGGAACGTGGTTTATTGGAACTACACTTGCACG-C-A-TATAGACACTA-TTTTGATATA 57
Query 1156 GAGACAGAGTTGTTAACTAGCAAGACACTGGTTAAGCTCACACTATCAGG-CGCATATTC 1214
|||||||||||||| || ||||||||||||||||||||||||||||| || | |||| |
Sbjct 58 GAGACAGAGTTGTTGACGAGCAAGACACTGGTTAAGCTCACACTATCCGGTCT-ATATGC 116
Query 1215 TCTTGAAGTCGAGCGTATGTTTTTCCCTGAGCTCAAATCACTTTCTCTATTATCAGTTTC 1274
| |||||||| || | |||||||||||| |||||||||||||||||||||||||||||
Sbjct 117 TATTGAAGTCAAGTATGTGTTTTTCCCTGCGCTCAAATCACTTTCTCTATTATCAGTTTT 176
Query 1275 AGGGCTTGATCATCCCAAATATTGT 1299
|||||||||| || ||| ||||||
Sbjct 177 AGGGCTTGATTATGACAACTATTGT 201
> Ahg933044 jgi|Araly1|933044|scaffold_401032.1
Length=443
Score = 187 bits (101), Expect = 2e-46
Identities = 215/268 (80%), Gaps = 16/268 (6%)
Strand=Plus/Plus
Query 760 ATTCGATAAGCAGTTTGCCAGATGAGATACTTGGCAAAATCCTGTCTTTGA-TTCCGAC- 817
||| ||| |||| ||||||| ||||||| ||| |||||| ||||| || | || ||||
Sbjct 41 ATTTGATCAGCAATTTGCCAAATGAGATTCTTACCAAAATTCTGTC-TTCACTTGCGACA 99
Query 818 -AAGTGGCTGCTTCGACATC-GGTTCTGTCCAAGAGGTGGAAGAATCTGCTATGTCTTGT 875
|||||| ||| || ||| | | ||||||||||||||||||||||||||||| |||||||
Sbjct 100 AAAGTGGTTGCCTCCACA-CAGATTCTGTCCAAGAGGTGGAAGAATCTGCTAGGTCTTGT 158
Query 876 AGACAACCTTTG-TTTTGATGAGTCGATGGTTGTTTATCCCAACGATGAAGAAGCAAGAC 934
||||| |||||| |||| |||| || |||||||| ||||| ||| || ||||| ||| |
Sbjct 159 AGACACCCTTTGGTTTT-ATGATTCCATGGTTGTGTATCCAAAC-ATAAAGAA-CAAAAA 215
Query 935 -GC-GGTTCACATCGCTTCCT-TGAGTTCGTAGACAAGACACTTGCTTTG-CTAAGCAAT 990
| |||| | | ||| || | ||| |||||||| |||||| ||||| || | |||||||
Sbjct 216 AGGTGGTTTAGACCGCCTC-TGTGATTTCGTAGAGAAGACATTTGCTCTGTC-AAGCAAT 273
Query 991 TCTCACATGAAGAAGTTCTCTCTGTCTC 1018
|||| ||| ||||| || |||||| |||
Sbjct 274 TCTCCCATCAAGAAATTATCTCTGCCTC 301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57211547990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5