BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47970.1
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473932 jgi|Araly1|473932|fgenesh2_kg.1__3886__AT1G47970.1 1182 0.0
> Ahg473932 jgi|Araly1|473932|fgenesh2_kg.1__3886__AT1G47970.1
Length=783
Score = 1182 bits (640), Expect = 0.0
Identities = 762/815 (93%), Gaps = 32/815 (4%)
Strand=Plus/Plus
Query 1 CTCTAAAAATTCTCCAGGAAAATCGAAAACTTTTCTCGGGAAAATCTTTAAACTTTTTGC 60
|||||||||||||||||||||||||||||| |||||||||||||||||| || |
Sbjct 1 CTCTAAAAATTCTCCAGGAAAATCGAAAAC-TTTCTCGGGAAAATCTTT--AC-----AC 52
Query 61 TTTTCGAAGAAACATGACTGGTGTTAATGATGATGATGATAAGAACTTCAAAGAAGAACC 120
|||| |||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 53 TTTT---------ATGACTGGCG-T--TGATGATGATGATAAGAACTTCAAAGAAGAACC 100
Query 121 AGAGATTCAAGTTTTAAGCGACGACGATAGTGATGAAGAACAAGTTAAAGACGTAGGTGA 180
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 TGAGATTCAAGTTCTAAGCGACGACGATAGTGATGAAGAACAAGTTAAAGACGTAGGTGA 160
Query 181 AGAAGTTAGCGACgaagacgatgatgatggaagtgaaggagatgatgatgatgatgagga 240
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 161 AGAAGTTAGCGACGAAGATGATGATGATGGAAGTGAAGGAGATGATGATGATGATGAGG- 219
Query 241 agaagaagaagatgacgatgacgatgatgatgTTCAGGTTTTGCAGTCTTTAGGTGGTCC 300
|| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 220 AG--GAAGAAGAAGACGATGATGATGATGATGTTCAGGTTTTGCAGTCTTTAGGTGGTCC 277
Query 301 TCCTGTACAATCAGCGgaagatgaagatgaagaaggtgatgaagatgggaacggtgatga 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 278 TCCTGTACAATCAGCGGAAGATGAAGATGAAGAAGGTGATGAAGATGGAAACGGTGATGA 337
Query 361 cgatgatgatgatggagatgatgatgatgacgacgatgatgatgaggatgaggatgttga 420
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||
Sbjct 338 CGATGATGATGATGGAGATGATGATGATGACGACGATGATGATGATGATGAAGATGCTGA 397
Query 421 agatgagggggatCTTGGGACAGAGTACTTAGTGAGGCCAGTTGGTAGAGCTGAAGATGA 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 398 AGATGAGGGGGATCTTGGGACAGAGTACTTAGTGAGGCCAGTTGGTAGAGCTGAGGATGA 457
Query 481 GGAGGATGCAAGTGATTTTGAGCCGGAAGAGAATGGTGTGGAAGAGGATATAGACGAAGG 540
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 458 GGAGGATGCAAGTGATTTTGAGCCGGAAGAGAATGGTGTGGAAGAGGATATTGATGAAGG 517
Query 541 AGAAGACGATGAGAATGATAACTCGGGTGGTGCTGGGAAGTCAGAGGCTCCGCCGAAGAG 600
||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| |
Sbjct 518 AGAAGACGATGAGAACGATAACTCGGGTGGTGCTGGGAAATCAGAGGCTCCACCGAAGCG 577
Query 601 GAAGAGAGCTCCTGAAGAAGATGAAGAGGATAGTGGTGATGAAGATGATGACAGACCTCC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 GAAGAGAGCTCCTGAAGAAGATGAAGAGGATAGTGGTGATGAAGATGATGACAGACCTCC 637
Query 661 AAAGAGGTAGTTTTTGGATCTGACAACAACACAATGAGACCAGAGAGCTTTTTATGtttt 720
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 638 AAAGAGGTAGTTTTCGGATCTGACAACAACACAATGAGACCAGAGAGCTTTT-ATGTTTT 696
Query 721 tttttCTaaaaaaaaTTTGGTGTTGTGAGATTTGAATCATTGGTTGGGGTTTATGTAAGT 780
||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 697 TTT----AAAAA---TTTGGTGTTGTGAGATTTGAATCATTGGTTGGGGTTCATGTAAGT 749
Query 781 TTATTATGGAGCAACTAAGTAGTAGTTTTAAGTTT 815
|||||||| |||||| |||||||||||||||||||
Sbjct 750 TTATTATGCAGCAAC-AAGTAGTAGTTTTAAGTTT 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34272502383
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5