BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47980.1
Length=1148
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923119 jgi|Araly1|923119|scaffold_104400.1 1581 0.0
> Ahg923119 jgi|Araly1|923119|scaffold_104400.1
Length=988
Score = 1581 bits (856), Expect = 0.0
Identities = 943/986 (96%), Gaps = 2/986 (0%)
Strand=Plus/Plus
Query 30 AAGCCAAAACGTTTTTAGACATGGCACTCACAAAAGAGAGAAGAAGCTTGTTGGTTTCAA 89
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 AAGCCAAAACATTTTTAGACATGGCAATCACAAAAGAGAGAAGAAGCTTGTTGGTTTCAA 60
Query 90 TGGTGTTGGT-GTTCTTCTTCTTCAACTTTCACCATCTTCAAGTCACGAGTTGTCCAGAT 148
||||| | || | ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 TGGTGATCGTAG-TCTTCTTCTTCAACTTTCACCATCTTCAAGTCATGAGTTGTCCAGAT 119
Query 149 CAGGCGACGACAAACTGTACGGACCAGGACAGGAAATTATTGGAGTTTCCATTGAATTTG 208
| ||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 120 CCGGCAACGACCAACTGTACGGATCAGGACAGGAAATTATTGGAGTTTCCATTGAATTTA 179
Query 209 GAGTACCTTGAAGCTGAGTTTTTCTTGTTCGGAGCGTTAGGGCTTGGTCTTGATAAAGTC 268
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 180 GAGTACCTTGAAGCTGAGTTTTTCTTGTTCGGAGCATTAGGGTTTGGTCTTGATAAAGTC 239
Query 269 GCACCAAATCTAACAATGGGAGGGCCAAGTCCTATTGGAGCTCAGAAAGCCAATCTCGAT 328
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 240 GCACCAAATCTAACAATGGGAGGGCCAAGTCCTATTGGAGCTCAGAAAGCTAATCTTGAT 299
Query 329 CCTTTGACAAGAGATATTATTTTGCAGTTTGCTTGGCAAGAGGTTGGCCACTTGAGGGCA 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCTTTGACAAGAGATATTATTTTGCAGTTTGCTTGGCAAGAGGTTGGCCACTTGAGGGCA 359
Query 389 ATCAAGAAAACGGTGAAAGGATTTGCAAGGCCACAACTTGATTTGAGTAAGAAAGCATTT 448
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 360 ATCAAGAAAACGGTGAAAGGATTTGCAAGGCCACAACTTGATTTGAGTAAAAAAGCATTT 419
Query 449 GCTAAAGTGATGGATAAAGCATTTGGAGTAAAATTTGTGCCGCCGTTCAATCCTTATGCC 508
|| ||||||||||||||||| |||||||| ||||||||||| || |||||||||||||||
Sbjct 420 GCGAAAGTGATGGATAAAGCCTTTGGAGTGAAATTTGTGCCACCATTCAATCCTTATGCC 479
Query 509 AATTCTTACAATTACCTCATTGCATCGTATTTGGTCCCTTATGTTGGTCTCACCGGATAC 568
||||||||||||||||||||||| || |||||||| ||||||||||||||||| ||||||
Sbjct 480 AATTCTTACAATTACCTCATTGCTTCTTATTTGGTACCTTATGTTGGTCTCACTGGATAC 539
Query 569 GTTGGCGCTAACCCTAAACTGCAATGTCCAGCCTCAAGAAAGTTAGTAGCAGGACTTTTG 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTTGGCGCTAACCCTAAACTGCAATGTCCAGCCTCAAGAAAGTTAGTAGCAGGACTTTTG 599
Query 629 GGAGTAGAATCGGGTCAAGACGCGGTGATTAGAGGTATGTTATATGCTCGAGCGGCACAC 688
|||||||||||||||||||| ||||| || ||||| |||||||| ||||| |||||||||
Sbjct 600 GGAGTAGAATCGGGTCAAGATGCGGTAATAAGAGGAATGTTATACGCTCGGGCGGCACAC 659
Query 689 ATAGTCTATCCTTATGGTGTCACGGTTGCGGCTTTCACGGATAAGATTTCGGATCTAAGG 748
||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 660 ATAGTCTATCCTTATGGTGTCACTGTCGCGGCTTTCACGGATAAGATTTCTGATCTAAGG 719
Query 749 AACAAATTGGGAAAAGCGGGTGTGAAAGATGAGGGATTGATCGTACCTAAATTCATGGGT 808
||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 720 AACAAGTTGGGAAAAGCGGGAGTGAAAGATGAGGGATTGGTCGTACCTAAATTCATGGGT 779
Query 809 GCAGAAGGACAAGTGATTGGGAATGTATTGGTCGGTAATGAGCTCTCGCTTTCGTTTGAT 868
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 780 GCAGAAGGACAAGTGATTGGGAATGTATTGGTCGGTAATGAGTTCTCGCTTTCGTTTGAT 839
Query 869 AGAACACCTGAGGAGATTCTACGGATTGTGTATGGAAGTGGAAATGAAAGTGTTCCCGGT 928
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 840 AGAACACCTGAAGAGATTCTACGGATTGTGTATGGGAGTGGAAATGAAAGCGTTCCCGGT 899
Query 929 GGATTTTACCCTAAAGGAGCGGATGGAGAAATCGCTAAGTCTTATTTGGTTACTGTCGGG 988
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 900 GGATTTTACCCTAAAGGAGCGGATGGAGAAATCGCTAAGTCTTATTTGGTTACTGTTGGG 959
Query 989 AGTGAGTGAGGTTTAGTTTTGCTTTG 1014
||||||||||||||||||||||||||
Sbjct 960 AGTGAGTGAGGTTTAGTTTTGCTTTG 985
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42812035791
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5