BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47990.1
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314235 jgi|Araly1|314235|fgenesh1_pm.C_scaffold_1003015 1607 0.0
> Ahg314235 jgi|Araly1|314235|fgenesh1_pm.C_scaffold_1003015
Length=966
Score = 1607 bits (870), Expect = 0.0
Identities = 934/966 (97%), Gaps = 0/966 (0%)
Strand=Plus/Plus
Query 1 ATGGTGAAAGGGTCCCAGAAAATCGTGGCCGTAGATCAAGACATACCAATAATAGACATG 60
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1 ATGGTGAAAGGGTCCCAGAAAATCGTGGCCGTAGATCAAGACATAGCAATAATAGATATG 60
Query 61 TCGCAGGAGAGATCACAAGTGTCGATGCAGATAGTCAAAGCCTGCGAGAGTCTCGGCTTC 120
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 61 TCGCAGGAGAGATCACAAGTGTCGATGCAGATAGTCAAAGCCTGTGAGACTCTCGGCTTC 120
Query 121 TTCAAAGTCATCAACCATGGCGTTGACCAAACCACCATCTCAAGAATGGAGCAAGAGTCT 180
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 TTCAAAGTGATCAACCATGGCGTTGACCAAACCACCATCTCAAGGATGGAGCAAGAGTCT 180
Query 181 ATAAACTTCTTTGCTAAACCGGCTCACGAGAAGAAATCTGTCCGACCAGTTAACCAGCCT 240
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 181 ATAAACTTCTTTGCTAAACCGGCTCACGAGAAGAAATCAGTCCGACCGGTTAACCAGCCT 240
Query 241 TTCCGGTATGGTTTTAGAGACATTGGACTCAACGGTGACTCTGGTGAGGTCGAGTATTTG 300
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 TTCCGGTATGGGTTTAGAGACATTGGCCTCAACGGTGACTCTGGTGAGGTCGAGTATTTG 300
Query 301 CTGTTTCACACTAACGACCCTGCCTTTCGCTCTCAGCTCTCCTTCAGCTCGGCAGTGAAT 360
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 301 CTGTTTCACACTAACGACCCTGCCTTTCGTTCTCAGCTCTCCTTCAGCTCGACAGTGAAT 360
Query 361 TGTTACATAGAAGCAGTTAAGCAGTTGGCTCGTGAGATCTTAGATCTGACGGCTGAGGGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGTTACATAGAAGCAGTTAAGCAGTTGGCTCGTGAGATCTTAGATCTGACGGCTGAGGGA 420
Query 421 CTTCATGTCCCACCTCACAGTTTCAGTAGGTTAATCAGCTCCGTCGATAGTGACTCCGTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTTCATGTCCCACCTCACAGTTTCAGTAGGTTAATCAGCTCCGTCGATAGTGACTCCGTT 480
Query 481 CTGAGAGTGAATCATTATCCACCGTCCGATCAATTCTTTGGTGAAGCCAATCTTTCTGAC 540
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 481 CTGAGAGTGAATCATTATCCACCGTCCGATCAATTCTTTGGTGGAGCCAATCTTTCTGAC 540
Query 541 CAATCTGTGTCACTGACAAGAGTTGGCTTCGGAGAACACACCGACCCTCAGATTTTAACA 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 AAATCTGTGTCACTGACAAGAGTTGGCTTCGGAGAACACACCGACCCTCAGATCTTAACA 600
Query 601 GTTCTTAGATCTAACGGTGTAGGAGGGCTCCAAGTGTCCAATTCAGATGGCATGTGGGTT 660
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 601 GTTCTTAGATCTAACGGTGTAGGAGGACTCCAAGTGTCAAATTCAGATGGCATGTGGGTT 660
Query 661 TCTGTCTCCCCTGACCCTTCAGCTTTCTGCGTCAATGTAGGAGACTTGTTACAGGTGATG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCTGTCTCCCCTGACCCTTCAGCTTTCTGCGTCAATGTAGGAGACTTGTTACAGGTGATG 720
Query 721 ACGAACGGGAGATTTATAAGTGTAAGGCATAGAGCATTGACCTACGGAGAAGAAAGCCGG 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 721 ACGAACGGGAGATTTATAAGTGTAAGGCATAGAGCATTGACCTACGGAGAAGAAAGTCGG 780
Query 781 CTATCCACGGCGTACTTTGCCGGACCACCGCTTCAGGCGAAGATTGGGCCTCTTTCGGCG 840
|| || ||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 781 CTCTCGACGGCGTACTTCGCTGGACCACCGCTTCAAGCGAAGATTGGGCCTCTTTCGGCC 840
Query 841 ATGGTTATGACGATGAATCAGCCACGGTTGTACCAAACATTTACTTGGGGCGAGTACAAG 900
||||| | || |||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 841 ATGGTCACGATGATGAATCAGCCACGGTTATACCAAACATTTACATGGGGCGAGTACAAG 900
Query 901 AAACGTGCGTACTCTCTACGACTTGAGGATAGCCGTTTAGACATGTTTCGTACATGTAAG 960
|||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 901 AAACTTGCGTACTCGCTACGACTCGAGGATAGCCGTTTAGACATGTTTCGTACATGTAAG 960
Query 961 GACTAG 966
||||||
Sbjct 961 GACTAG 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35873664897
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5