BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48000.1
Length=905
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473935 jgi|Araly1|473935|fgenesh2_kg.1__3889__AT1G48000.1 1131 0.0
Ahg495021 jgi|Araly1|495021|fgenesh2_kg.8__837__AT5G49620.1 322 3e-87
> Ahg473935 jgi|Araly1|473935|fgenesh2_kg.1__3889__AT1G48000.1
Length=747
Score = 1131 bits (612), Expect = 0.0
Identities = 708/754 (94%), Gaps = 8/754 (1%)
Strand=Plus/Plus
Query 63 AGTTTCTAAGAATCTCAAAGCATGAATATAAGTAGAACAGAATTCGCAAACTGTAAAACC 122
||||| | ||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGTTTATGAGAATATCAAAGCGTGAATATAAGTAGAACAGAATTCGCAAACTGTAAAACC 60
Query 123 CTTATAAATCATAAAGAAGAAGTCGAAGAAGTCGAGAAAAAGATGGAAATAGAAATAAGG 182
||||| || |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 61 CTTATTAAGCATAAAGAAGAAGTGGAAGAAGTCGAGAAGAAGATGGAAATAGAAATAAGG 120
Query 183 AGAGGTCCATGGACTGTGGAAGAAGACATGAAGCTCGTCAGTTACATTTCTCTTCACGGT 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGAGGTCCATGGACTGTGGAAGAAGACATGAAGCTCGTCAGTTACATTTCTCTTCACGGT 180
Query 243 GAAGGAAGATGGAACTCCCTCTCTCGTTCTGCTGGACTGAATAGAACGGGGAAAAGTTGC 302
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 181 GAAGGAAGATGGAACTCCCTCTCTCGTTCTGCTGGACTAAATAGGACGGGGAAAAGTTGC 240
Query 303 AGATTGCGGTGGCTAAATTATCTCCGGCCGGATATCCGCCGTGGAGACATATCCCTTCAA 362
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 AGATTGCGGTGGCTGAATTATCTCCGGCCGGATATCCGCCGTGGAGACATATCCCTCCAA 300
Query 363 GAACAATTTATCATCCTTGAACTCCATTCTCGTTGGGGAAATCGGTGGTCAAAGATTGCT 422
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAACAATTTATCATTCTTGAACTCCATTCTCGTTGGGGAAATCGGTGGTCAAAGATTGCT 360
Query 423 CAACATTTACCGGGAAGAACAGATAACGAGATAAAGAATTATTGGAGAACACGTGTTCAA 482
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 CAACATTTACCAGGAAGAACAGATAACGAGATAAAGAATTATTGGAGAACACGTGTCCAA 420
Query 483 AAGCATGCAAAACTTCTAAAATGTGACGTGAACAGCAAGCAATTCAAAGACACCATCAAA 542
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 AAGCATGCACAACTTCTAAAATGTGACGTGAATAGCAAGCAATTCAAAGACACCATCAAA 480
Query 543 CATCTCTGGATGCCTCGTCTCATCGAGAGAATCGCCGCCACTCAAAGTGTCCAATTTACC 602
||||||||||||||||||||| |||||||||||||| ||||||||| |||| ||||||||
Sbjct 481 CATCTCTGGATGCCTCGTCTCGTCGAGAGAATCGCCTCCACTCAAAATGTCGAATTTACC 540
Query 603 TCTAACCACTACTCGCCTGAGAACTCCAGCGTCGCCACCGCCACGTCATCAACGTCGTCG 662
||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct 541 CCTAACCACTACTCGCCTGAGAACTCGAGCGTCGCCACTGCCACGTCATCTACGTCGTCG 600
Query 663 TCTGAGGCTGTGAG-ATCGAGTTTCTACGGTGGTGATCAGGTGGAATTTGGAACGTTGGA 721
|||||| | || | ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 601 TCTGAGTCCATG-GCATCGAGTTTCTACGGTGATGATCAGGTGGAATATGGAACGTTGGA 659
Query 722 TCATATGACAAATGGTGGTTATTGGTTCAACGGCGGAGATACGTTTGAAACTTTGTGTAG 781
|| || | ||||||| | |||||||||||||||||| |||||||||||||||| ||
Sbjct 660 TCC---GA-A--TGGTGGTGACTGGTTCAACGGCGGAGATGCGTTTGAAACTTTGTGGAG 713
Query 782 TTTTGACGAGCTCAACAAGTGGCTCATACAGTAG 815
|| ||| |||||||||||||||||| ||||||||
Sbjct 714 TTCTGAGGAGCTCAACAAGTGGCTCTTACAGTAG 747
> Ahg495021 jgi|Araly1|495021|fgenesh2_kg.8__837__AT5G49620.1
Length=1001
Score = 322 bits (174), Expect = 3e-87
Identities = 330/404 (82%), Gaps = 16/404 (4%)
Strand=Plus/Plus
Query 168 GAAATAGAAATAAGGAGAGGTCCATGGACTGTGGAAGAAGACAT-GAAGCTCGTCAGTTA 226
|||||| | |||| |||||||||||||| | || ||||| | | ||||| ||| |||
Sbjct 67 GAAATATACCTAAGAAGAGGTCCATGGACCATTGAGGAAGATTTCG-AGCTCATCAATTA 125
Query 227 CATTTCT-CTTCACGGTGAAGGAAGATGGAACTCCCTCTCTCGTT-CTGCTGGACTGAAT 284
|||| || | ||| || ||||| |||||||||| ||| |||||| | || ||||| ||
Sbjct 126 CATTGCTAC-TCATGGAGAAGGTCGATGGAACTCTCTCGCTCGTTGC-GCAGGACTCAAA 183
Query 285 AGAACGGGGAAAAGTTGCAGA-TTGCGGTGGCTAAATTATCTCCGGCCGGATATCCGCCG 343
|| || || ||||| |||||| || ||||||||||| ||||| || || ||| |||||||
Sbjct 184 AGGACCGGAAAAAGCTGCAGACTT-CGGTGGCTAAACTATCTTCGACCAGATGTCCGCCG 242
Query 344 TGGAGACATATCCCTTC-AAGAACAA-TTTATCATCCTTGAACTCCATTCTCGTTGGGGA 401
|||| ||||| ||| || |||||||| | | | || |||||||| || || ||||||||
Sbjct 243 TGGAAACATAACCC-TCGAAGAACAACTCT-TGATTCTTGAACTTCACTCCCGTTGGGGT 300
Query 402 AATCGGTGGTCAAAGATTGCTCAACATTTACCGGGAAGAACAGATAACGAGAT-AAAGAA 460
||| | ||||| |||||||| ||| ||||||| |||||||| ||||||||||| ||| ||
Sbjct 301 AATAGATGGTCTAAGATTGCACAATATTTACCAGGAAGAACTGATAACGAGATCAAA-AA 359
Query 461 TTATTGGAGAACACGTGTTCAAAAGCATGCAAAACTTCTAAAATGTGACGTGAACAG-CA 519
|||||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||
Sbjct 360 CTATTGGAGAACACGTGTTCAAAAGCATGCAAAACAGCTTAAATGCGACGTGAACAGTCA 419
Query 520 AGCAATTCAAAGACACCATCAAACATCTCTGGATGCCTCGTCTC 563
| ||||| ||||||||||| || |||| ||||||||||| |||
Sbjct 420 A-CAATTTAAAGACACCATGAAGTATCTTTGGATGCCTCGGCTC 462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33548166960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5