BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G48010.1 Length=537 Score E Sequences producing significant alignments: (Bits) Value Ahg473936 jgi|Araly1|473936|fgenesh2_kg.1__3890__AT1G48010.1 512 9e-145 > Ahg473936 jgi|Araly1|473936|fgenesh2_kg.1__3890__AT1G48010.1 Length=387 Score = 512 bits (277), Expect = 9e-145 Identities = 355/392 (91%), Gaps = 7/392 (2%) Strand=Plus/Plus Query 148 GATCCTAAAATTGGAAAA-CTTGATCTTCCTGGCGTTGCCAAATGTTTGATTCATTATGC 206 |||||||||||| ||||| ||||||||| ||| | |||||||| |||||| ||| |||| Sbjct 1 GATCCTAAAATT-GAAAAGCTTGATCTTTCTGACACTGCCAAATATTTGATACATCATGC 59 Query 207 TCAACAAAATGCCTTAGATACACATAATCAGTTACAATTACTTGCTAATAGCACGACTGA 266 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 60 GCAACAAAATGCCTTAGACACACATAATCAGTTACAATTACTTGCTAATAGCACGACCGA 119 Query 267 TAACCGTACCAAAGAATCTTACATCTCATGCTCAAAGTATTACGACAAGGCTCTTTACTC 326 ||| ||||| ||||||| ||||||||||||||||||||| |||||||| ||||||||||| Sbjct 120 TAAACGTACTAAAGAATGTTACATCTCATGCTCAAAGTACTACGACAAAGCTCTTTACTC 179 Query 327 TTTTGATGAGGCCCTAAAAGATTTAAAGGTCAATAATCCTGATTATTTAAATATTGAGAT 386 ||||| |||||||||||| ||| || ||||| ||||||||||||||||||| ||||||| Sbjct 180 TTTTGGTGAGGCCCTAAAGGATATAGAGGTCCATAATCCTGATTATTTAAACGTTGAGAT 239 Query 387 -TACAGCTGCTCGGCAAAATGCAAATGATTGCAAAACTTTGGATCTGAAAGATGTCTTCA 445 | ||||||||||||||||||||||||||||||||||||| |||||||||||||| | | Sbjct 240 CT-CAGCTGCTCGGCAAAATGCAAATGATTGCAAAACTTTAGATCTGAAAGATGT-T--A 295 Query 446 AACCTGATCCAAAACTCATTATGAAGATAGATTTTCTTGAGAATGTATGTGGAATTCTTT 505 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | | Sbjct 296 AACCTGATCCAAAACTCATGATGAAGATAGATTTTCTTGAGAATGTATGTGGAATTGTCT 355 Query 506 TATCCATTTCTGATATATTACCAAAGTATTAG 537 | || |||||||| |||||||||||| ||||| Sbjct 356 TGTCAATTTCTGACATATTACCAAAGAATTAG 387 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19573817157 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5