BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G48010.1

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg473936 jgi|Araly1|473936|fgenesh2_kg.1__3890__AT1G48010.1         512    9e-145


> Ahg473936 jgi|Araly1|473936|fgenesh2_kg.1__3890__AT1G48010.1
Length=387

 Score =  512 bits (277),  Expect = 9e-145
 Identities = 355/392 (91%), Gaps = 7/392 (2%)
 Strand=Plus/Plus

Query  148  GATCCTAAAATTGGAAAA-CTTGATCTTCCTGGCGTTGCCAAATGTTTGATTCATTATGC  206
            |||||||||||| ||||| ||||||||| ||| |  |||||||| |||||| ||| ||||
Sbjct  1    GATCCTAAAATT-GAAAAGCTTGATCTTTCTGACACTGCCAAATATTTGATACATCATGC  59

Query  207  TCAACAAAATGCCTTAGATACACATAATCAGTTACAATTACTTGCTAATAGCACGACTGA  266
             ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct  60   GCAACAAAATGCCTTAGACACACATAATCAGTTACAATTACTTGCTAATAGCACGACCGA  119

Query  267  TAACCGTACCAAAGAATCTTACATCTCATGCTCAAAGTATTACGACAAGGCTCTTTACTC  326
            ||| ||||| ||||||| ||||||||||||||||||||| |||||||| |||||||||||
Sbjct  120  TAAACGTACTAAAGAATGTTACATCTCATGCTCAAAGTACTACGACAAAGCTCTTTACTC  179

Query  327  TTTTGATGAGGCCCTAAAAGATTTAAAGGTCAATAATCCTGATTATTTAAATATTGAGAT  386
            ||||| |||||||||||| ||| || ||||| |||||||||||||||||||  |||||||
Sbjct  180  TTTTGGTGAGGCCCTAAAGGATATAGAGGTCCATAATCCTGATTATTTAAACGTTGAGAT  239

Query  387  -TACAGCTGCTCGGCAAAATGCAAATGATTGCAAAACTTTGGATCTGAAAGATGTCTTCA  445
             | ||||||||||||||||||||||||||||||||||||| |||||||||||||| |  |
Sbjct  240  CT-CAGCTGCTCGGCAAAATGCAAATGATTGCAAAACTTTAGATCTGAAAGATGT-T--A  295

Query  446  AACCTGATCCAAAACTCATTATGAAGATAGATTTTCTTGAGAATGTATGTGGAATTCTTT  505
            ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct  296  AACCTGATCCAAAACTCATGATGAAGATAGATTTTCTTGAGAATGTATGTGGAATTGTCT  355

Query  506  TATCCATTTCTGATATATTACCAAAGTATTAG  537
            | || |||||||| |||||||||||| |||||
Sbjct  356  TGTCAATTTCTGACATATTACCAAAGAATTAG  387



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19573817157


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5