BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48020.1
Length=758
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923128 jgi|Araly1|923128|scaffold_104409.1 928 0.0
Ahg923122 jgi|Araly1|923122|scaffold_104403.1 928 0.0
> Ahg923128 jgi|Araly1|923128|scaffold_104409.1
Length=574
Score = 928 bits (502), Expect = 0.0
Identities = 546/567 (96%), Gaps = 3/567 (1%)
Strand=Plus/Plus
Query 32 AGAGAAAACAAGAATGGCTGCGAATCTAAGGAACAATGCGTTCTTGTCTTCTCTCATGTT 91
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 10 AGAGAAAACAAGAATGGCTGCGAATCTAAGGAACAATGCGTTCTTGTCTTCTCTTATGTT 69
Query 92 TCTTCTCTTGATCGGTTCATCATACGCAATCACAAGTTCAGAAATGAGCACAATCTGTGA 151
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 70 TCTTCTCTTAATCGGTTCCTCATACGCAATCACAAGTTCAGAAATGAGCACAATCTGTGA 129
Query 152 CAAAACCTTAAATCCATCTTTCTGTCTTAAGTTCCTCAATACGAAATTCGCATCGCCTAA 211
|||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 130 CAAAACCTTAAACCCATCTTTCTGTCTTAAATTCCTCAATACTAAATTCGCATCTCCTAA 189
Query 212 TCTTCAAGCCTTGGCAAAAACCACACTTGATTCTACACAAGCGAGAGCTACACAAACGTT 271
||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||| ||
Sbjct 190 TCTTCAAGCCTTGGCAAAAACCACACTTGATGCTACACAAGCAAGAGCAACACAAACATT 249
Query 272 -AAAGAAACTCCAATCTATTATCGATGGAGGAGTCGACCCTCGATCTAAGTTAGCTTACA 330
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 250 CAAA-AAACTCCAATCTATTATCGATGGAGGAGTCGACCCTCGATCTAAATTAGCTTACA 308
Query 331 GGTCATGCGTAGATGAATACGAGAGCGCGATTGGAAACCTCGAGGAAGCTTTTGAGCATT 390
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 GGTCATGCTTAGATGAATACGAGAGCGCGATTGGAAACCTCGAGGAAGCTTTTGAGCATT 368
Query 391 TAGCTTCAGGAGATGGTATGGGGATGAACATGAAAGTTTCTGCTGCATTGGATGGAGCTG 450
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 369 TAGCTTCAGGAGATGGCATGGGGATGAACATGAAAGTTTCTGCTGCATTGGATGGTGCTG 428
Query 451 ATACATGTTTAGATGATGTGAAGAGATTGAGATCAGTAGATTCTTCGGTTGTGAATAACA 510
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 429 ATACATGTTTAGATGATGTGAAGAGATTGAGATCAGTAGATGCTTCGGTTGTGAATAACA 488
Query 511 GTAAAACAATTAAGAATCTTTGTGGTATTGCTCTTGTTATCTCTAACATGTTACCACGTA 570
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 GTAAAGCAATTAAGAATCTTTGTGGTATTGCTCTTGTTATCTCTAACATGTTACCACGTA 548
Query 571 ATTAATTTGAAAATCTTCATCATGTGT 597
|||||||| ||| ||||||||||||||
Sbjct 549 ATTAATTTTAAA-TCTTCATCATGTGT 574
> Ahg923122 jgi|Araly1|923122|scaffold_104403.1
Length=574
Score = 928 bits (502), Expect = 0.0
Identities = 546/567 (96%), Gaps = 3/567 (1%)
Strand=Plus/Plus
Query 32 AGAGAAAACAAGAATGGCTGCGAATCTAAGGAACAATGCGTTCTTGTCTTCTCTCATGTT 91
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 10 AGAGAAAACAAGAATGGCTGCGAATCTAAGGAACAATGCGTTCTTGTCTTCTCTTATGTT 69
Query 92 TCTTCTCTTGATCGGTTCATCATACGCAATCACAAGTTCAGAAATGAGCACAATCTGTGA 151
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 70 TCTTCTCTTAATCGGTTCCTCATACGCAATCACAAGTTCAGAAATGAGCACAATCTGTGA 129
Query 152 CAAAACCTTAAATCCATCTTTCTGTCTTAAGTTCCTCAATACGAAATTCGCATCGCCTAA 211
|||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 130 CAAAACCTTAAACCCATCTTTCTGTCTTAAATTCCTCAATACTAAATTCGCATCTCCTAA 189
Query 212 TCTTCAAGCCTTGGCAAAAACCACACTTGATTCTACACAAGCGAGAGCTACACAAACGTT 271
||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||| ||
Sbjct 190 TCTTCAAGCCTTGGCAAAAACCACACTTGATGCTACACAAGCAAGAGCAACACAAACATT 249
Query 272 -AAAGAAACTCCAATCTATTATCGATGGAGGAGTCGACCCTCGATCTAAGTTAGCTTACA 330
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 250 CAAA-AAACTCCAATCTATTATCGATGGAGGAGTCGACCCTCGATCTAAATTAGCTTACA 308
Query 331 GGTCATGCGTAGATGAATACGAGAGCGCGATTGGAAACCTCGAGGAAGCTTTTGAGCATT 390
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 GGTCATGCTTAGATGAATACGAGAGCGCGATTGGAAACCTCGAGGAAGCTTTTGAGCATT 368
Query 391 TAGCTTCAGGAGATGGTATGGGGATGAACATGAAAGTTTCTGCTGCATTGGATGGAGCTG 450
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 369 TAGCTTCAGGAGATGGCATGGGGATGAACATGAAAGTTTCTGCTGCATTGGATGGTGCTG 428
Query 451 ATACATGTTTAGATGATGTGAAGAGATTGAGATCAGTAGATTCTTCGGTTGTGAATAACA 510
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 429 ATACATGTTTAGATGATGTGAAGAGATTGAGATCAGTAGATTATTCGGTTGTGAATAACA 488
Query 511 GTAAAACAATTAAGAATCTTTGTGGTATTGCTCTTGTTATCTCTAACATGTTACCACGTA 570
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 GTAAAGCAATTAAGAATCTTTGTGGTATTGCTCTTGTTATCTCTAACATGTTACCACGTA 548
Query 571 ATTAATTTGAAAATCTTCATCATGTGT 597
|||||||| ||| ||||||||||||||
Sbjct 549 ATTAATTTTAAA-TCTTCATCATGTGT 574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27944098161
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5