BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G48020.1 Length=758 Score E Sequences producing significant alignments: (Bits) Value Ahg923128 jgi|Araly1|923128|scaffold_104409.1 928 0.0 Ahg923122 jgi|Araly1|923122|scaffold_104403.1 928 0.0 > Ahg923128 jgi|Araly1|923128|scaffold_104409.1 Length=574 Score = 928 bits (502), Expect = 0.0 Identities = 546/567 (96%), Gaps = 3/567 (1%) Strand=Plus/Plus Query 32 AGAGAAAACAAGAATGGCTGCGAATCTAAGGAACAATGCGTTCTTGTCTTCTCTCATGTT 91 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 10 AGAGAAAACAAGAATGGCTGCGAATCTAAGGAACAATGCGTTCTTGTCTTCTCTTATGTT 69 Query 92 TCTTCTCTTGATCGGTTCATCATACGCAATCACAAGTTCAGAAATGAGCACAATCTGTGA 151 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 70 TCTTCTCTTAATCGGTTCCTCATACGCAATCACAAGTTCAGAAATGAGCACAATCTGTGA 129 Query 152 CAAAACCTTAAATCCATCTTTCTGTCTTAAGTTCCTCAATACGAAATTCGCATCGCCTAA 211 |||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| Sbjct 130 CAAAACCTTAAACCCATCTTTCTGTCTTAAATTCCTCAATACTAAATTCGCATCTCCTAA 189 Query 212 TCTTCAAGCCTTGGCAAAAACCACACTTGATTCTACACAAGCGAGAGCTACACAAACGTT 271 ||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||| || Sbjct 190 TCTTCAAGCCTTGGCAAAAACCACACTTGATGCTACACAAGCAAGAGCAACACAAACATT 249 Query 272 -AAAGAAACTCCAATCTATTATCGATGGAGGAGTCGACCCTCGATCTAAGTTAGCTTACA 330 ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 250 CAAA-AAACTCCAATCTATTATCGATGGAGGAGTCGACCCTCGATCTAAATTAGCTTACA 308 Query 331 GGTCATGCGTAGATGAATACGAGAGCGCGATTGGAAACCTCGAGGAAGCTTTTGAGCATT 390 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 309 GGTCATGCTTAGATGAATACGAGAGCGCGATTGGAAACCTCGAGGAAGCTTTTGAGCATT 368 Query 391 TAGCTTCAGGAGATGGTATGGGGATGAACATGAAAGTTTCTGCTGCATTGGATGGAGCTG 450 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 369 TAGCTTCAGGAGATGGCATGGGGATGAACATGAAAGTTTCTGCTGCATTGGATGGTGCTG 428 Query 451 ATACATGTTTAGATGATGTGAAGAGATTGAGATCAGTAGATTCTTCGGTTGTGAATAACA 510 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 429 ATACATGTTTAGATGATGTGAAGAGATTGAGATCAGTAGATGCTTCGGTTGTGAATAACA 488 Query 511 GTAAAACAATTAAGAATCTTTGTGGTATTGCTCTTGTTATCTCTAACATGTTACCACGTA 570 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 489 GTAAAGCAATTAAGAATCTTTGTGGTATTGCTCTTGTTATCTCTAACATGTTACCACGTA 548 Query 571 ATTAATTTGAAAATCTTCATCATGTGT 597 |||||||| ||| |||||||||||||| Sbjct 549 ATTAATTTTAAA-TCTTCATCATGTGT 574 > Ahg923122 jgi|Araly1|923122|scaffold_104403.1 Length=574 Score = 928 bits (502), Expect = 0.0 Identities = 546/567 (96%), Gaps = 3/567 (1%) Strand=Plus/Plus Query 32 AGAGAAAACAAGAATGGCTGCGAATCTAAGGAACAATGCGTTCTTGTCTTCTCTCATGTT 91 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 10 AGAGAAAACAAGAATGGCTGCGAATCTAAGGAACAATGCGTTCTTGTCTTCTCTTATGTT 69 Query 92 TCTTCTCTTGATCGGTTCATCATACGCAATCACAAGTTCAGAAATGAGCACAATCTGTGA 151 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 70 TCTTCTCTTAATCGGTTCCTCATACGCAATCACAAGTTCAGAAATGAGCACAATCTGTGA 129 Query 152 CAAAACCTTAAATCCATCTTTCTGTCTTAAGTTCCTCAATACGAAATTCGCATCGCCTAA 211 |||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| Sbjct 130 CAAAACCTTAAACCCATCTTTCTGTCTTAAATTCCTCAATACTAAATTCGCATCTCCTAA 189 Query 212 TCTTCAAGCCTTGGCAAAAACCACACTTGATTCTACACAAGCGAGAGCTACACAAACGTT 271 ||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||| || Sbjct 190 TCTTCAAGCCTTGGCAAAAACCACACTTGATGCTACACAAGCAAGAGCAACACAAACATT 249 Query 272 -AAAGAAACTCCAATCTATTATCGATGGAGGAGTCGACCCTCGATCTAAGTTAGCTTACA 330 ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 250 CAAA-AAACTCCAATCTATTATCGATGGAGGAGTCGACCCTCGATCTAAATTAGCTTACA 308 Query 331 GGTCATGCGTAGATGAATACGAGAGCGCGATTGGAAACCTCGAGGAAGCTTTTGAGCATT 390 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 309 GGTCATGCTTAGATGAATACGAGAGCGCGATTGGAAACCTCGAGGAAGCTTTTGAGCATT 368 Query 391 TAGCTTCAGGAGATGGTATGGGGATGAACATGAAAGTTTCTGCTGCATTGGATGGAGCTG 450 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 369 TAGCTTCAGGAGATGGCATGGGGATGAACATGAAAGTTTCTGCTGCATTGGATGGTGCTG 428 Query 451 ATACATGTTTAGATGATGTGAAGAGATTGAGATCAGTAGATTCTTCGGTTGTGAATAACA 510 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 429 ATACATGTTTAGATGATGTGAAGAGATTGAGATCAGTAGATTATTCGGTTGTGAATAACA 488 Query 511 GTAAAACAATTAAGAATCTTTGTGGTATTGCTCTTGTTATCTCTAACATGTTACCACGTA 570 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 489 GTAAAGCAATTAAGAATCTTTGTGGTATTGCTCTTGTTATCTCTAACATGTTACCACGTA 548 Query 571 ATTAATTTGAAAATCTTCATCATGTGT 597 |||||||| ||| |||||||||||||| Sbjct 549 ATTAATTTTAAA-TCTTCATCATGTGT 574 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27944098161 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5