BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48040.1
Length=1619
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473940 jgi|Araly1|473940|fgenesh2_kg.1__3894__AT1G48040.1 2375 0.0
Ahg896196 jgi|Araly1|896196|Al_scaffold_0005_162 531 8e-150
> Ahg473940 jgi|Araly1|473940|fgenesh2_kg.1__3894__AT1G48040.1
Length=1627
Score = 2375 bits (1286), Expect = 0.0
Identities = 1519/1629 (93%), Gaps = 25/1629 (2%)
Strand=Plus/Plus
Query 9 TCTTCTTTATTCTTTTAGGCGAATTTCAATTGCGTCCAAGCAAAGCA---CCAC--CT-C 62
||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
Sbjct 1 TCTTCTTTATTCTTTTAGGCGAATTTCAATTGCGTCCAAGCAAAGCACCTCCACGGCTCC 60
Query 63 TTACCC-------CGTTGATTTATTCGTCGATTTGCCTTTCGGTGAAATTCGCAATCGGA 115
||| ||| ||||||||| ||||||| ||||||||||||||||||||| |||
Sbjct 61 ACCCCCAAATTTTCGTGGATTTATTCTTCGATTTACCTTTCGGTGAAATTCGCAATTGGA 120
Query 116 TCTACTCCATTTGATTATTAACCAAGTCATGATTTTGAGTCAAACAATGGTTGCTGAAGC 175
||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct 121 TCTGCTCCATTTGATTATAAACAAAGTCATGATTTTGAGTCAAACAATGGTTGCTGAGGC 180
Query 176 TGAGATCAGGGTTCTTGACGTTAAGTGCCATATCTCCGCTCCTAAAGATCAGAAGAATTT 235
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 TGAGATCAGGGTTCTTGACGTTAAGTGCCATATCTCCGCTGCTAAAGATCAGAAGAATTT 240
Query 236 TCAGATCGACGAAGTTCGTGTTTCTGAGTCTGTCCGTGCTGAGATTTCGGGTTCCGCTGA 295
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 TCAGATCGGCGAAGTTCGTGTTTCTGAGTCTGTTCGTGCTGAGATTTCGGGTTCCGCTGA 300
Query 296 AACGCCTCGATTCGGATCGGGCATGAGTTGTGTAACTACTACCATTGGAGAATCCGCCAG 355
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 301 AACGCCTCGATTCGGATCGGGCATGAGCTGTGTAACTACTACCATTGGAGAATCAACCAG 360
Query 356 TGACTTTATCCCAACTATACGTTCAGGGAGCTTTGCTGACATTCGAAGTCGAGAAACCAT 415
||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 TGAGTTTATTCCAACTATACGTTCAGGGAGCTTTGCTGACATTCGAAGCCGAGAAACCAT 420
Query 416 GGAGGATGAACACATTTGCATAGATGATTTGTCAGCTCACCTTGGATCCTACAACTTCTC 475
||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||||||||
Sbjct 421 GGAGGATGAACACATTTGCATAGATGACTTGTCAGCTCATCTTGGGTCCTTTAACTTCTC 480
Query 476 GGTACCAAGTGCTTTTTATGGTGTGTTTGATGGTCATGGTGGGCCTGAGGCAGCAATTTT 535
||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 481 GGTACCAAGTGCTTTTTATGGCGTGTTTGATGGACATGGTGGACCTGAGGCAGCAATTTT 540
Query 536 CATGAAGGAGAACTTGACTAGATTGTTTTTCCAAGATGCTGTGTTTCCAGAGATGCCCTC 595
||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 541 CATGAAGGAAAACTTGACTAGATTGTTTTTTCAAGATGCTGTATTTCCAGAGATGCCCTC 600
Query 596 CATTGTGGACGCGTTTTTCTTAGAAGAACTGGAGAATTCTCACCGAAAGGCTTTTGCTTT 655
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CATTGTGGATGCGTTTTTCTTAGAAGAACTGGAGAATTCTCACCGAAAGGCTTTTGCTTT 660
Query 656 GGCTGATCTTGCCATGGCTGATGAAACCATTGTCAGTGGTTCATGCGGGACAACCGCTTT 715
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 661 GGCTGATCTTGCCATGGCTGATGAAAGCATTGTCAGTGGTTCATGCGGGACAACCGCGTT 720
Query 716 GACCGCTCTCATAATCGGACGACATCTTCTTGTTGCTAATGCTGGAGATTGTCGTGCAGT 775
||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 721 GACCGCTCTGATAATTGGACGACATCTTCTGGTTGCTAATGCTGGAGATTGCCGTGCAGT 780
Query 776 GCTATGTAGGAGAGGAGTGGCTGTTGATATGTCTTTCGATCACAGATCAACATATGAGCC 835
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCTATGCCGGAGAGGAGTGGCTGTTGATATGTCTTTCGATCACAGATCAACATATGAGCC 840
Query 836 AGAAAGAAGGCGGATTGAAGATTTAGGAGGATACTTTGAGGATGGATACCTCAACGGAGT 895
|||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 841 AGAACGAAGGCGGATTGAAGATTTAGGAGGATACTTTGAGGACGGATATCTCAACGGGGT 900
Query 896 CCTAGCTGTCACGCGTGCCATTGGAGATTGGGAACTGAAGAATCCTTTCACTGACTCCTC 955
||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 901 CCTTGCTGTAACCCGTGCCATTGGGGATTGGGAACTGAAGAATCCTTTCACTGACTCCTC 960
Query 956 TTCACCACTGATTTCAGACCCAGAGATTGGACAGATCATTCTAACAGAGGACGACGAGTT 1015
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 961 TTCACCACTGATTTCTGACCCAGAGATTCGACAGATCATTCTAACAGAGGACGACGAGTT 1020
Query 1016 CTTGATTTTGGCATGTGATGGTATATGGGATGTGTTGTCAAGCCAGAATGCAGTGAGTAA 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CTTGATTTTGGCATGTGATGGTATATGGGATGTGTTGTCAAGCCAGAATGCAGTGAGTAA 1080
Query 1076 TGTAAGGCAAGGATTGAGGAGGCATGGTGACCCGAGACAATGTGCGATGGAACTAGGAAA 1135
|||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1081 TGTAAGGCAAGGTTTAAGGAGGCATGGTGACCCGAGACAATGTGCGATGGAACTTGGAAA 1140
Query 1136 AGAAGCAGCGAGGCTTCAGTCATCAGATAATATGACGGTTATAGTGATCTGCTTCTCCTC 1195
||||||||| |||||| | ||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1141 AGAAGCAGCTAGGCTTAACTCATCAGATAATATGACGGTTGTAGTCATCTGCTTCTCCTC 1200
Query 1196 AGTTCCGTCTTCACCTAAACAACCGCAAAGAAGAAGATTAAGATTCTGTGTTTCTGACGA 1255
||| ||||||||||||||||||| ||| || ||||||||||||||||||||||| || ||
Sbjct 1201 AGTCCCGTCTTCACCTAAACAACTGCAGAGGAGAAGATTAAGATTCTGTGTTTCCGATGA 1260
Query 1256 AGCCCGAGCTCGGTTACAAGCAATGCTTGCAGGCGAGTGAAAGCAGTGTTTTTGGCAGTA 1315
|| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 1261 AGGCCGAGCTCGGTTACAAGCAATGCTTGGAGGCGAGTGAAAGCAGTTTTTTTGGCGGTA 1320
Query 1316 TGTACAAACAACAGGGATCGGGTGTTACCGATCAAACCATTATTTCTCTAATTTGAGATT 1375
| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1321 TATACAAACAACAGGGATCGGGTGCTACCGATCAAACGATTATTTCTCTAATTTGAGATT 1380
Query 1376 CGATTCGATGA-GA--TAAAATAAGAGACGTAGAGAG--TGATAGAGAGTTAAGGTCTTG 1430
| ||| ||||| || ||||||||||||| ||||||| || |||||| |||||||| ||
Sbjct 1381 CCATTGGATGATGAGATAAAATAAGAGACTTAGAGAGAGTGGTAGAGATTTAAGGTCATG 1440
Query 1431 TTTGTAATGTGGTTTCTCATTTTTGATTGATCTGtttttttGGTTTGTTTCagagagaga 1490
|||||||||||||| |||| |||||||| |||||||||||||||| ||||||||||||||
Sbjct 1441 TTTGTAATGTGGTTACTCAGTTTTGATTCATCTGTTTTTTTGGTT-GTTTCAGAGAGAGA 1499
Query 1491 ----tagagagaAAAACCAGCCTGAAGTTTTGGTAGGATTATTGAAACTGATTAA-GAGG 1545
|||||||||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1500 GAGCTAGAGAGAAAAAGCAGCCTGAAGTTTTGGTAGGATTATTGAAACTGAT-AATGAGG 1558
Query 1546 ATTTCATTTTTGTTCTTGAGGATTAGTGATGTTGTACCCATTATTGATTGTTTTAAGGAA 1605
|||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1559 ATTTCATTTTTGTTCTCGAGGATTAGTTATGTTGTACCCATTATTGATTGGTTTAAGGAT 1618
Query 1606 TTTTAATTT 1614
|||||||||
Sbjct 1619 TTTTAATTT 1627
> Ahg896196 jgi|Araly1|896196|Al_scaffold_0005_162
Length=501
Score = 531 bits (287), Expect = 8e-150
Identities = 395/447 (88%), Gaps = 8/447 (2%)
Strand=Plus/Plus
Query 162 ATGGTTGCTGAAGCTGAGATCAGGGTTCTTGACGTTAAGTGCCATATCTCCGCTCCTAAA 221
|||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGGTTACTGAGGCTGAGATCAGGGTTCTTGACGTTAAGTGCCATATCTCCGCTGCTAAA 60
Query 222 GATCAGAAGAATTTTCAGATCGACGAAGTTCGTGTTTCTGAGTCTGTCCGTGCTGAGATT 281
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 GATCAGAAGAATTTTCATATCGACGAAGTTCGTGTTTCTGAGTCTGTCTGTGCTGAGATT 120
Query 282 TCGGGTTCCGCTGAAACGCCTCGATTCGGATCG-GGCATGAGTTG---TGTAAC-T-AC- 334
|| ||||| |||||||||||| ||||| ||||| || ||| || | | | |
Sbjct 121 TCCGGTTCTGCTGAAACGCCTAGATTCAGATCGAAATATCCCTTGAAATGGATCATGGCT 180
Query 335 TACCATTGGAGAATCCGCCAGTGACTTTATCCCAACTATACGTTCAGGGAGCTTTGCTGA 394
|| ||| | ||||| ||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 181 TA-TATTAGTGAATCAACCAGTGAGTTTATCGCAACTATACGTTCAGGGAGCTTTGCTGA 239
Query 395 CATTCGAAGTCGAGAAACCATGGAGGATGAACACATTTGCATAGATGATTTGTCAGCTCA 454
||||||||| | |||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 240 CATTCGAAGCCAAGAAACAATGGAGGATGAACACATTTGCATAGATGACTTGTCAGCTCA 299
Query 455 CCTTGGATCCTACAACTTCTCGGTACCAAGTGCTTTTTATGGTGTGTTTGATGGTCATGG 514
|||||||||| ||| ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 300 TCTTGGATCCTTTAACCTCTCGGTACCAAGTGCTTTTTATGGCGTGTTTGATGGACATGG 359
Query 515 TGGGCCTGAGGCAGCAATTTTCATGAAGGAGAACTTGACTAGATTGTTTTTCCAAGATGC 574
||| |||||||||||| |||| |||||||||||||| || ||||||||||| |||||||
Sbjct 360 TGGACCTGAGGCAGCAGTTTTTATGAAGGAGAACTTAACAAGATTGTTTTTTCAAGATGT 419
Query 575 TGTGTTTCCAGAGATGCCCTCCATTGT 601
||| ||| |||||||||||||||||||
Sbjct 420 TGTATTTTCAGAGATGCCCTCCATTGT 446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60677760285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5