BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48060.1
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314240 jgi|Araly1|314240|fgenesh1_pm.C_scaffold_1003020 1254 0.0
Ahg913831 jgi|Araly1|913831|Al_scaffold_0001_4085 499 1e-140
> Ahg314240 jgi|Araly1|314240|fgenesh1_pm.C_scaffold_1003020
Length=1113
Score = 1254 bits (679), Expect = 0.0
Identities = 954/1083 (88%), Gaps = 34/1083 (3%)
Strand=Plus/Plus
Query 6 GAGGAAAAGAAGTAAATCATCATCGTCGTTGTCCATACCTCTCGATATAGCCACAGATAT 65
||| |||||| ||||||| |||||||||||||||||||||||||||||| ||||||| ||
Sbjct 39 GAGAAAAAGATGTAAATCTTCATCGTCGTTGTCCATACCTCTCGATATAACCACAGAGAT 98
Query 66 ATTCTTAAGGCTTCCTGCGAAGTCTGTCGTAAGGTTTAGTTGTGTGGCGAAGCATTGGTC 125
|||||||| ||| |||||||| ||||||| ||||||| ||||||| |||||| ||||||
Sbjct 99 ATTCTTAAAGCTACCTGCGAAATCTGTCGCAAGGTTTCGTTGTGTTTCGAAGCTTTGGTC 158
Query 126 ATCAATCACCACCGCTCCATATTTCACCAACTCGTTCGAAACTCGACCTAATCTTTTGTT 185
||||||| ||||| ||| ||||||||||| |||||||||| |||||||||| ||||||||
Sbjct 159 ATCAATCCCCACCTCTCGATATTTCACCACCTCGTTCGAATCTCGACCTAACCTTTTGTT 218
Query 186 CTTCTTCAAAGAA-GCTGACAGGTTCTTTGTTGTCACGGTTCCTAAACCTAATCGGAGAC 244
||||||||||||| || | |||||||||||||||||| |||||||||||||||||||||
Sbjct 219 CTTCTTCAAAGAAGGC-AATAGGTTCTTTGTTGTCACGATTCCTAAACCTAATCGGAGAC 277
Query 245 CGAACGAGTCCGTTTCTCATACTTCTTCTCAGATTCTTGATAGTTACCAAACACCCTATC 304
||||||||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 278 CGAACGAGTCCTTTTCTTATACTTCTTCTGAGATTCTTGATAGTTACCAAATACCCTATC 337
Query 305 CAAAACATAGCTGCTTCACCATTAAAACCGAGTCGGTCCACGGTTTGATCTGCTTCCAGA 364
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 338 CAAAACATAGCTGCCTCACCATTAAAACCGAGTCGGTCCACGGTTTGATCTGCTTTCAGA 397
Query 365 GAGGTACAAAGCCTATAGTTTGGAACCCTACTATGAGAAAGTTCAAACCTTTACGCAAAC 424
|||| ||||| |||| ||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 398 GAGGAACAAAACCTACAGTCTGGAACCCTATTATGAGAAAGTTCAAACCTTTACGCAAAC 457
Query 425 CGGACAAGAGCTGGGAGAGTTTAACAGTCTTTTTAGGGTATGATCCACTCGAACGGACGC 484
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| | ||
Sbjct 458 CGGACAAGAGCTGGGAGAGTTTAACTGTCTTTTTAGGGTATGATCCAGTCGAACGTAAGC 517
Query 485 ACAAAGTAGTGGCCATGCCGTGTGATAAAGCTTCTGATGAGTGTAG-GATTTTAACATTG 543
||||||||||| ||||| | |||||| ||||||||||||||||| | | ||||||| |||
Sbjct 518 ACAAAGTAGTGTCCATGACTTGTGATCAAGCTTCTGATGAGTGTCGTG-TTTTAACGTTG 576
Query 544 GGTTCAGCAGATCAAGAATCATGGAGAACAGTCAAAACCAATTATAAGCATCACCCTAGC 603
|| |||| | |||||||||||||||||| ||||||||||| || ||||||| |||| |
Sbjct 577 GGATCAG-A--TCAAGAATCATGGAGAACGGTCAAAACCAACTACAAGCATCTCCCTTTC 633
Query 604 CGTGGCAATCGCAAAAACAATTATGGACCATGCAGATGCATCAACGGTGTTC--T---AT 658
|||||||| |||||| ||||||||||||| |||||||||||||||||| ||| | ||
Sbjct 634 CGTGGCAAGCGCAAAGACAATTATGGACCGTGCAGATGCATCAACGGT-TTCCATGCGAT 692
Query 659 A---TTATC-TAGCC-GAG-A-TT---G--ATCG-TCATCGAC-TC--ATC--GGGAAGT 700
| ||| | | | ||| | || | | | | || || || || |||||||
Sbjct 693 AAGATTACCATGGGATGAGGAGTTTTCGCCAAAGATGAT-GATATCTTATAAAGGGAAGT 751
Query 701 TCGCTTTTCTCGGTCATTCCAATGTGAAGAATAGTCTTCCCATGTGGGTTTTAGAGGGTG 760
| |||| ||||||||||||||||| || |||||||||||| |||||||||||||||| ||
Sbjct 752 TAGCTTATCTCGGTCATTCCAATGGGACGAATAGTCTTCCTATGTGGGTTTTAGAGGATG 811
Query 761 AAAAGAAGGGCGAATGGTCAACTTATAATTTTTTACCTCTTTCTCACTATGATCGGCGTT 820
||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| |||
Sbjct 812 CAAAGAAGGGTGAATGGTCGACTTATAACTTTTTACCTCTTTCTCACTATGATCGGAGTT 871
Query 821 TAGAGTTCCATTTCAAGCTAATAGGTATCACCAATGATGGTGAATTGATTTACGTACCAA 880
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 CAGAGACCCATTTCAAGCTAATAGGTATCACCAATGATGGTGAATTGATTTACGTACCAT 931
Query 881 ACACGGTATTCAAAACATTTGAAGTTATATACATTGATCCAATAAGAAAGACGTTTAGCC 940
||| ||||||| || | ||||| || ||||| ||||||||||||||||||||||||||
Sbjct 932 ACATGGTATTCGAATCTTTTGATGTCATATATATTGATCCAATAAGAAAGACGTTTAGGA 991
Query 941 TTGTCAAATACGAAGGAGTTGCAGATAAAGGTTTTAGACAACGCAATGGACTTGGAGAAG 1000
||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 992 GAGTCAAATACAAAGGAGTTGCAGATAAAGGTTTTAGACAACGCAATGGACTTGAAGAAC 1051
Query 1001 ATAAACCTTTACGTGGGATTCAATATTCACCCAATCACGTTGAGACTCT-ACTGTCTTTG 1059
||||||||||||||||||| ||||||||||||||||| ||||| ||||| | | ||||||
Sbjct 1052 ATAAACCTTTACGTGGGATACAATATTCACCCAATCATGTTGACACTCTCA-TATCTTTG 1110
Query 1060 TGA 1062
|||
Sbjct 1111 TGA 1113
> Ahg913831 jgi|Araly1|913831|Al_scaffold_0001_4085
Length=504
Score = 499 bits (270), Expect = 1e-140
Identities = 419/489 (86%), Gaps = 18/489 (4%)
Strand=Plus/Plus
Query 499 ATGCCGTGTGATAAAGCTTCTGATGAGTGTAGGATTTTAACATTGGGTTCAGCAGATCAA 558
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGCCGTGTAATAAAGCTTCTGATGAGTGTCGGATTTTAACATTGGGTTCAGCAGATCAA 60
Query 559 GAATCATGGAGAACAGTCAAAACCAATTATAAGCATCACCCTAGCCGTGGCAATCGCAAA 618
|||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 61 GAATCATGGAGAACGGTCAAAACCAATTATAAGCATCGCCCTTGCCGTGGCAATCGCAAA 120
Query 619 AACAATTATGGACCATGCAGATGCATCAACGGTGTTCTATATTATCTAGCCGAGATTGAT 678
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
Sbjct 121 GACAATTATGGACCATGGAGATGCATCAACGGTGTTCTATATTATCGAGCCGAGATTGGT 180
Query 679 CGTCATCGACTCATCGGGAAGTTC-GCTTTTC--TCGGTCAT-T-CCAATGTGAAGAATA 733
| |||||| | || || ||| | | | || | || | ||| || || || |
Sbjct 181 CCTCATCGGGTTATAATGA-GTTTTGATGTAAAATCTGAAATGTTCCA-TGCGAT-AAGA 237
Query 734 GTCTTCCCATGTGGGTTTTAGAGGGTGAAAAGAAGGGCGAATGGTCAACTTATAATTTTT 793
| | || ||| || | |||| || ||||||||| |||||||| |||||||| ||||
Sbjct 238 -T-TACC-ATG-GGAT----GAGGATGCAAAGAAGGGTGAATGGTCCACTTATAACTTTT 289
Query 794 TACCTCTTTCTCACTATGATCG-GCGTTTAGAGTTCCATTTCAAGCTAATAGGTATCACC 852
|||||||||||||||||||||| | ||| |||| ||||||||||||||||||||| ||
Sbjct 290 TACCTCTTTCTCACTATGATCGTG-GTTCAGAGAACCATTTCAAGCTAATAGGTATGACT 348
Query 853 AATGATGGTGAATTGATTTACGTACCAAACACGGTATTCAAAACATTTGAAGTTATATAC 912
||||||||||||||||||||||||||||||||||| ||| || | ||||| ||||||||
Sbjct 349 AATGATGGTGAATTGATTTACGTACCAAACACGGTGTTCGAATCTTTTGATGTTATATAT 408
Query 913 ATTGATCCAATAAGAAAGACGTTTAGCCTTGTCAAATACGAAGGAGTTGCAGATAAAGGT 972
|||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| |
Sbjct 409 ATTGATCCAATAAGAAAGACGTTTAGAAGAGTCAAATACAAAGGAATTGCAGATAAAGAT 468
Query 973 TTTAGACAA 981
|||||||||
Sbjct 469 TTTAGACAA 477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39533464929
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5