BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G48060.1 Length=1062 Score E Sequences producing significant alignments: (Bits) Value Ahg314240 jgi|Araly1|314240|fgenesh1_pm.C_scaffold_1003020 1254 0.0 Ahg913831 jgi|Araly1|913831|Al_scaffold_0001_4085 499 1e-140 > Ahg314240 jgi|Araly1|314240|fgenesh1_pm.C_scaffold_1003020 Length=1113 Score = 1254 bits (679), Expect = 0.0 Identities = 954/1083 (88%), Gaps = 34/1083 (3%) Strand=Plus/Plus Query 6 GAGGAAAAGAAGTAAATCATCATCGTCGTTGTCCATACCTCTCGATATAGCCACAGATAT 65 ||| |||||| ||||||| |||||||||||||||||||||||||||||| ||||||| || Sbjct 39 GAGAAAAAGATGTAAATCTTCATCGTCGTTGTCCATACCTCTCGATATAACCACAGAGAT 98 Query 66 ATTCTTAAGGCTTCCTGCGAAGTCTGTCGTAAGGTTTAGTTGTGTGGCGAAGCATTGGTC 125 |||||||| ||| |||||||| ||||||| ||||||| ||||||| |||||| |||||| Sbjct 99 ATTCTTAAAGCTACCTGCGAAATCTGTCGCAAGGTTTCGTTGTGTTTCGAAGCTTTGGTC 158 Query 126 ATCAATCACCACCGCTCCATATTTCACCAACTCGTTCGAAACTCGACCTAATCTTTTGTT 185 ||||||| ||||| ||| ||||||||||| |||||||||| |||||||||| |||||||| Sbjct 159 ATCAATCCCCACCTCTCGATATTTCACCACCTCGTTCGAATCTCGACCTAACCTTTTGTT 218 Query 186 CTTCTTCAAAGAA-GCTGACAGGTTCTTTGTTGTCACGGTTCCTAAACCTAATCGGAGAC 244 ||||||||||||| || | |||||||||||||||||| ||||||||||||||||||||| Sbjct 219 CTTCTTCAAAGAAGGC-AATAGGTTCTTTGTTGTCACGATTCCTAAACCTAATCGGAGAC 277 Query 245 CGAACGAGTCCGTTTCTCATACTTCTTCTCAGATTCTTGATAGTTACCAAACACCCTATC 304 ||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||||||| Sbjct 278 CGAACGAGTCCTTTTCTTATACTTCTTCTGAGATTCTTGATAGTTACCAAATACCCTATC 337 Query 305 CAAAACATAGCTGCTTCACCATTAAAACCGAGTCGGTCCACGGTTTGATCTGCTTCCAGA 364 |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 338 CAAAACATAGCTGCCTCACCATTAAAACCGAGTCGGTCCACGGTTTGATCTGCTTTCAGA 397 Query 365 GAGGTACAAAGCCTATAGTTTGGAACCCTACTATGAGAAAGTTCAAACCTTTACGCAAAC 424 |||| ||||| |||| ||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 398 GAGGAACAAAACCTACAGTCTGGAACCCTATTATGAGAAAGTTCAAACCTTTACGCAAAC 457 Query 425 CGGACAAGAGCTGGGAGAGTTTAACAGTCTTTTTAGGGTATGATCCACTCGAACGGACGC 484 ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| | || Sbjct 458 CGGACAAGAGCTGGGAGAGTTTAACTGTCTTTTTAGGGTATGATCCAGTCGAACGTAAGC 517 Query 485 ACAAAGTAGTGGCCATGCCGTGTGATAAAGCTTCTGATGAGTGTAG-GATTTTAACATTG 543 ||||||||||| ||||| | |||||| ||||||||||||||||| | | ||||||| ||| Sbjct 518 ACAAAGTAGTGTCCATGACTTGTGATCAAGCTTCTGATGAGTGTCGTG-TTTTAACGTTG 576 Query 544 GGTTCAGCAGATCAAGAATCATGGAGAACAGTCAAAACCAATTATAAGCATCACCCTAGC 603 || |||| | |||||||||||||||||| ||||||||||| || ||||||| |||| | Sbjct 577 GGATCAG-A--TCAAGAATCATGGAGAACGGTCAAAACCAACTACAAGCATCTCCCTTTC 633 Query 604 CGTGGCAATCGCAAAAACAATTATGGACCATGCAGATGCATCAACGGTGTTC--T---AT 658 |||||||| |||||| ||||||||||||| |||||||||||||||||| ||| | || Sbjct 634 CGTGGCAAGCGCAAAGACAATTATGGACCGTGCAGATGCATCAACGGT-TTCCATGCGAT 692 Query 659 A---TTATC-TAGCC-GAG-A-TT---G--ATCG-TCATCGAC-TC--ATC--GGGAAGT 700 | ||| | | | ||| | || | | | | || || || || ||||||| Sbjct 693 AAGATTACCATGGGATGAGGAGTTTTCGCCAAAGATGAT-GATATCTTATAAAGGGAAGT 751 Query 701 TCGCTTTTCTCGGTCATTCCAATGTGAAGAATAGTCTTCCCATGTGGGTTTTAGAGGGTG 760 | |||| ||||||||||||||||| || |||||||||||| |||||||||||||||| || Sbjct 752 TAGCTTATCTCGGTCATTCCAATGGGACGAATAGTCTTCCTATGTGGGTTTTAGAGGATG 811 Query 761 AAAAGAAGGGCGAATGGTCAACTTATAATTTTTTACCTCTTTCTCACTATGATCGGCGTT 820 ||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| ||| Sbjct 812 CAAAGAAGGGTGAATGGTCGACTTATAACTTTTTACCTCTTTCTCACTATGATCGGAGTT 871 Query 821 TAGAGTTCCATTTCAAGCTAATAGGTATCACCAATGATGGTGAATTGATTTACGTACCAA 880 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 872 CAGAGACCCATTTCAAGCTAATAGGTATCACCAATGATGGTGAATTGATTTACGTACCAT 931 Query 881 ACACGGTATTCAAAACATTTGAAGTTATATACATTGATCCAATAAGAAAGACGTTTAGCC 940 ||| ||||||| || | ||||| || ||||| |||||||||||||||||||||||||| Sbjct 932 ACATGGTATTCGAATCTTTTGATGTCATATATATTGATCCAATAAGAAAGACGTTTAGGA 991 Query 941 TTGTCAAATACGAAGGAGTTGCAGATAAAGGTTTTAGACAACGCAATGGACTTGGAGAAG 1000 ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 992 GAGTCAAATACAAAGGAGTTGCAGATAAAGGTTTTAGACAACGCAATGGACTTGAAGAAC 1051 Query 1001 ATAAACCTTTACGTGGGATTCAATATTCACCCAATCACGTTGAGACTCT-ACTGTCTTTG 1059 ||||||||||||||||||| ||||||||||||||||| ||||| ||||| | | |||||| Sbjct 1052 ATAAACCTTTACGTGGGATACAATATTCACCCAATCATGTTGACACTCTCA-TATCTTTG 1110 Query 1060 TGA 1062 ||| Sbjct 1111 TGA 1113 > Ahg913831 jgi|Araly1|913831|Al_scaffold_0001_4085 Length=504 Score = 499 bits (270), Expect = 1e-140 Identities = 419/489 (86%), Gaps = 18/489 (4%) Strand=Plus/Plus Query 499 ATGCCGTGTGATAAAGCTTCTGATGAGTGTAGGATTTTAACATTGGGTTCAGCAGATCAA 558 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 ATGCCGTGTAATAAAGCTTCTGATGAGTGTCGGATTTTAACATTGGGTTCAGCAGATCAA 60 Query 559 GAATCATGGAGAACAGTCAAAACCAATTATAAGCATCACCCTAGCCGTGGCAATCGCAAA 618 |||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 61 GAATCATGGAGAACGGTCAAAACCAATTATAAGCATCGCCCTTGCCGTGGCAATCGCAAA 120 Query 619 AACAATTATGGACCATGCAGATGCATCAACGGTGTTCTATATTATCTAGCCGAGATTGAT 678 |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| | Sbjct 121 GACAATTATGGACCATGGAGATGCATCAACGGTGTTCTATATTATCGAGCCGAGATTGGT 180 Query 679 CGTCATCGACTCATCGGGAAGTTC-GCTTTTC--TCGGTCAT-T-CCAATGTGAAGAATA 733 | |||||| | || || ||| | | | || | || | ||| || || || | Sbjct 181 CCTCATCGGGTTATAATGA-GTTTTGATGTAAAATCTGAAATGTTCCA-TGCGAT-AAGA 237 Query 734 GTCTTCCCATGTGGGTTTTAGAGGGTGAAAAGAAGGGCGAATGGTCAACTTATAATTTTT 793 | | || ||| || | |||| || ||||||||| |||||||| |||||||| |||| Sbjct 238 -T-TACC-ATG-GGAT----GAGGATGCAAAGAAGGGTGAATGGTCCACTTATAACTTTT 289 Query 794 TACCTCTTTCTCACTATGATCG-GCGTTTAGAGTTCCATTTCAAGCTAATAGGTATCACC 852 |||||||||||||||||||||| | ||| |||| ||||||||||||||||||||| || Sbjct 290 TACCTCTTTCTCACTATGATCGTG-GTTCAGAGAACCATTTCAAGCTAATAGGTATGACT 348 Query 853 AATGATGGTGAATTGATTTACGTACCAAACACGGTATTCAAAACATTTGAAGTTATATAC 912 ||||||||||||||||||||||||||||||||||| ||| || | ||||| |||||||| Sbjct 349 AATGATGGTGAATTGATTTACGTACCAAACACGGTGTTCGAATCTTTTGATGTTATATAT 408 Query 913 ATTGATCCAATAAGAAAGACGTTTAGCCTTGTCAAATACGAAGGAGTTGCAGATAAAGGT 972 |||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| | Sbjct 409 ATTGATCCAATAAGAAAGACGTTTAGAAGAGTCAAATACAAAGGAATTGCAGATAAAGAT 468 Query 973 TTTAGACAA 981 ||||||||| Sbjct 469 TTTAGACAA 477 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39533464929 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5