BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G48070.1

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg913835 jgi|Araly1|913835|Al_scaffold_0001_4089                    503    6e-142


> Ahg913835 jgi|Araly1|913835|Al_scaffold_0001_4089
Length=348

 Score =  503 bits (272),  Expect = 6e-142
 Identities = 321/345 (93%), Gaps = 2/345 (1%)
 Strand=Plus/Plus

Query  26   ATGTACTTGGTGGGTAGTGGCTTTAGTCAAGGGGAAGTGACATGGTTGAGTAACGAAGTT  85
            |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  1    ATGTACTTGGTGGGCAGTGGCTTTAGTCAAGGGGAAGTGAAATGGTTGAGTAACGAAGTT  60

Query  86   GAATGGCGACTTATTCTGACCACGACTCAACTTCCTATCGTGGTTACGGTAACATCCTCG  145
            |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct  61   GAATGGCGACTTATTCTGACCACGACTCAACTTCCTATAGTTGTTACGGTAACATCCTCG  120

Query  146  TTGTGC-GATGACCGGTGCACTATATTGGATGATCAACTGGCCCGATTGTCTGAAACCTA  204
            |||||| | || ||| ||| |||||||||||||||||||||| || ||||||||||| ||
Sbjct  121  TTGTGCCG-TGGCCGATGCGCTATATTGGATGATCAACTGGCTCGGTTGTCTGAAACTTA  179

Query  205  TGGTAACCTAATTATATTACGTAAAGCCAATATTTTGACGAATCCATTCTTTGCAATACT  264
            ||||| |||||||||||| ||||||| |||||||||||||||||||||||||  ||||||
Sbjct  180  TGGTAGCCTAATTATATTGCGTAAAGTCAATATTTTGACGAATCCATTCTTTAAAATACT  239

Query  265  TTACAATTTGGTCAATGCCCCGATCATCATAGTCTTCCAAACTGGAAAAGAAATAGCACG  324
            ||||||||| | |||||||||| |||||||||||||||||||||||||||||||||  ||
Sbjct  240  TTACAATTTAGCCAATGCCCCGGTCATCATAGTCTTCCAAACTGGAAAAGAAATAGGGCG  299

Query  325  TTTAGAAAATGATTTATCTTGGGGTGCAATCACTGACATAATCGA  369
            ||||| | |||||||||||||||||||||||||||||||||||||
Sbjct  300  TTTAGTAGATGATTTATCTTGGGGTGCAATCACTGACATAATCGA  344



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19344883623


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5