BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G48070.1 Length=531 Score E Sequences producing significant alignments: (Bits) Value Ahg913835 jgi|Araly1|913835|Al_scaffold_0001_4089 503 6e-142 > Ahg913835 jgi|Araly1|913835|Al_scaffold_0001_4089 Length=348 Score = 503 bits (272), Expect = 6e-142 Identities = 321/345 (93%), Gaps = 2/345 (1%) Strand=Plus/Plus Query 26 ATGTACTTGGTGGGTAGTGGCTTTAGTCAAGGGGAAGTGACATGGTTGAGTAACGAAGTT 85 |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1 ATGTACTTGGTGGGCAGTGGCTTTAGTCAAGGGGAAGTGAAATGGTTGAGTAACGAAGTT 60 Query 86 GAATGGCGACTTATTCTGACCACGACTCAACTTCCTATCGTGGTTACGGTAACATCCTCG 145 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 61 GAATGGCGACTTATTCTGACCACGACTCAACTTCCTATAGTTGTTACGGTAACATCCTCG 120 Query 146 TTGTGC-GATGACCGGTGCACTATATTGGATGATCAACTGGCCCGATTGTCTGAAACCTA 204 |||||| | || ||| ||| |||||||||||||||||||||| || ||||||||||| || Sbjct 121 TTGTGCCG-TGGCCGATGCGCTATATTGGATGATCAACTGGCTCGGTTGTCTGAAACTTA 179 Query 205 TGGTAACCTAATTATATTACGTAAAGCCAATATTTTGACGAATCCATTCTTTGCAATACT 264 ||||| |||||||||||| ||||||| ||||||||||||||||||||||||| |||||| Sbjct 180 TGGTAGCCTAATTATATTGCGTAAAGTCAATATTTTGACGAATCCATTCTTTAAAATACT 239 Query 265 TTACAATTTGGTCAATGCCCCGATCATCATAGTCTTCCAAACTGGAAAAGAAATAGCACG 324 ||||||||| | |||||||||| ||||||||||||||||||||||||||||||||| || Sbjct 240 TTACAATTTAGCCAATGCCCCGGTCATCATAGTCTTCCAAACTGGAAAAGAAATAGGGCG 299 Query 325 TTTAGAAAATGATTTATCTTGGGGTGCAATCACTGACATAATCGA 369 ||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 300 TTTAGTAGATGATTTATCTTGGGGTGCAATCACTGACATAATCGA 344 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19344883623 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5