BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48110.1
Length=2582
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473949 jgi|Araly1|473949|fgenesh2_kg.1__3903__AT1G48110.2 3046 0.0
Ahg904695 jgi|Araly1|904695|Al_scaffold_0003_1823 754 0.0
> Ahg473949 jgi|Araly1|473949|fgenesh2_kg.1__3903__AT1G48110.2
Length=2803
Score = 3046 bits (1649), Expect = 0.0
Identities = 1898/2015 (94%), Gaps = 29/2015 (1%)
Strand=Plus/Plus
Query 202 AATTTCTGGTGTTTATTCAAACTCCATTGTTACAAAGATTTTCTTTGATAAGTT-AAAGC 260
|||||| |||||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 542 AATTTCAGGTGTTTATTCAAACTCCATTGACACAAACATTTTCTTTGATAAGTTAAAAGC 601
Query 261 AATGTATACCTCCGAGGCAGCCCCTGATTTTGTTGTTGACCAGGGCATGTATTACCCCGT 320
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 AATGTATACCTCCGAGGGAGCCCCTGATTTTGTTGTTGACCAGGGCATGTATTACCCCGT 661
Query 321 TGATGCCAGTTATGGCTATTACTGTACAGGTTATGAGTCACCCGGTGATTGGGAGAACCA 380
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 662 TGATGCCAGTTATGGCTATTACTGTACAGTTTATGAGTCACCCGGTGATTGGGAGAACCA 721
Query 381 TCAGATGTTTTTTGGTGTAGATGGTTCAGAAGTCCAATACACAGGTGGGCAGAATGAAAA 440
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 722 TCAGATGTTTTTTGGTGTAGATGGTTCAGAAGTCCAGTATACGGGTGGGCAGAATGAAAA 781
Query 441 TTCTCCCTATATATGCTATACACCTAGTTATGGATATGCACAGTCTCCTTATAATCCATT 500
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 782 TTCTCCCTATATATGCTATACACCTAGTTATGGATATGCACAGTCTCCTTACAATCCATT 841
Query 501 CAATCCTTACATACCTGGCGCTTCAATTGGCGTTGATTCTGCTTTTGTT-GCTCCTCAAC 559
|||||||||||||||||||||| |||| |||||||||||| |||||||| | ||||||||
Sbjct 842 CAATCCTTACATACCTGGCGCTGCAATAGGCGTTGATTCTCCTTTTGTTAG-TCCTCAAC 900
Query 560 AATTTTACTCTATTCCTCCTTACCAGAGTGTTGCAACGTCGCCTACTTTTGTTCCATATG 619
| ||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||
Sbjct 901 AGTTTTACTCTATTCCTCCTTTCCAGAGTGTTGCAACGTCACCTACGTTTGTTCCATATG 960
Query 620 CAATTCAACCTGAGATTGTCTCGAATAGCTCTACAAACTCTTTGGTTGAGACTGGTTCAG 679
|||||||| |||| ||| |||||||||||| |||||||||||||| ||||||| |||||
Sbjct 961 CAATTCAAACTGATATTACCTCGAATAGCTCAACAAACTCTTTGGTAGAGACTGTTTCAG 1020
Query 680 CTAATAGGGGTCGATCTGATGGGAGAGGGTCAAGGCAGAGAAGTGGCACCGCTACTGCCG 739
||||||||| |||||| |||||||||||||| |||||||||| |||||||||||||| |
Sbjct 1021 CTAATAGGGATCGATCCGATGGGAGAGGGTCCAGGCAGAGAAATGGCACCGCTACTGGTG 1080
Query 740 GACTCCAAAGGAATGATCCGAAACTTCCTGCAGGGAACTCTTTGGGCAAGATCTCGGAGA 799
| || |||||||||| ||| |||||| |||||| |||||||| |||||||||||| ||||
Sbjct 1081 GGCTTCAAAGGAATGCTCCAAAACTTTCTGCAGTGAACTCTTCGGGCAAGATCTCTGAGA 1140
Query 800 AACCAAGGCCTAATTCTGGACAAAGCAGACAGTCAGAAATGGACAAGAGTGATTCTACTT 859
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1141 AACCAAGGCCTAACTCTGGACAAAGCAGACAGCCAGAAATGGACAAGAGTGATTCTACTT 1200
Query 860 CATCATCAGGACAAGCTCGCCAGGGAAGAGTTACCTCCGTCAGT-G--CTCAACCTGTTG 916
| |||||||||||||||| ||||||||||| ||||||||||||| | ||||||||||||
Sbjct 1201 CGTCATCAGGACAAGCTCTCCAGGGAAGAGCTACCTCCGTCAGTAGTACTCAACCTGTTG 1260
Query 917 ACGTGGTTTCCAGTAGCAGAGTATCGTCTTTTAGGCAATTAGACATTGCTCCACCTCAAC 976
|||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1261 ACGTTGTTTCTAGTAGCAGAGTATCGTCTTTTGGGCAATTAGACATTGCTCCACCTGAAC 1320
Query 977 TTAATGATTTTTCAAAAATTGCAACAAACAATAACAATATTCGGCCCAAGCTGTATGGTG 1036
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1321 TTAATGGTTTTTCAAAAATTGCAACAAACAATAACAATCTTCGGCCCAAGCTGTATGGTG 1380
Query 1037 GCCATGCAAATATAATTCCTGATACAGTCCGTGAACAAAATCGAGGTCGAAGATCGAGAG 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GCCATGCAAATATAATTCCTGATACAGTCCGTGAACAAAATCGAGGTCGAAGATCGAGAG 1440
Query 1097 CATTGGGAAATCAACTTATTGTTAAAGCTTATACAACAAAAGCTGGAAATGCTGATGCCG 1156
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1441 CATTGGGAAATCAACTTATTGTTAAGGCTTATACAACAAAAGCTGGAAATGCTGATGCCG 1500
Query 1157 AGGGAAATATTGTGATCAATCCTTCTCAGTATAATAAAGAGGATCTCCGAATCGATTACA 1216
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 AAGGAAATATTGTGATCAATCCTTCTCAGTATAATAAAGAGGATCTCCGAATCGATTACA 1560
Query 1217 GCAATGCCAAGTTTTTTGTGATTAAATCGTATAGTGAAGATGACGTTCACAAGAGCATCA 1276
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1561 GCAATGCCAAGTTTTTTGTGATTAAATCGTATAGTGAAGATGATGTTCACAAGAGCATCA 1620
Query 1277 AATACAATGTTTGGTCATCAACTTTGCATGGGAACAAGAAATTGCAGAGTGCGTATGAAG 1336
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1621 AATACAATGTTTGGTCATCAACTTTGCATGGGAACAAAAAATTGCAGAGTGCGTATGAAG 1680
Query 1337 ATGCTCAGAGAATAGCCACCGAGAAGTCTTGTGAATGCCCGATATTCTTGTTCTTTTCTG 1396
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 ATGCTCAGAGAATAGCCGCCGAGAAGTCTTGTGAATGCCCGATATTCTTGTTCTTTTCTG 1740
Query 1397 TTAATGCCAGTGGTTTGTTCTGTGGCATGGCTGAGATGACTGGTCCAGTTTCTTTTGATA 1456
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 TCAATGCCAGTGGTTTGTTCTGTGGCATGGCTGAGATGACTGGTCCAGTTTCTTTTGATA 1800
Query 1457 AAGACATGGATTTTTGGCAGCAAGACAAATGGAGTGGAAGCTTTCCCGTCAAATGGCACA 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 AAGACATGGATTTTTGGCAGCAAGACAAATGGAGTGGAAGCTTTCCCGTCAAATGGCACA 1860
Query 1517 TCATAAAAGATGTTCCCAATAGCTATTTCAGGCACATCATACTACAGAACAATGAGAATA 1576
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1861 TCATAAAAGATGTTCCCAATAGCTATTTCAGGCACATCATACTACAGAATAATGAAAATA 1920
Query 1577 AGCCGGTCACCAACAGTCGAGACACACAAGAGATAATGCTGAAACAAGGTCTGGAAGTGC 1636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 AGCCGGTCACCAACAGTCGAGACACACAAGAGATAATGCTGAAACAAGGTCTGGAAGTGC 1980
Query 1637 TAAAAATATTTAAAGATCATATGGAAAGGACTTCATTGCTAGATGATTTTGTGTACTACG 1696
||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||
Sbjct 1981 TAAAAATATTTAAAGATCATATGGAAAGGACTTCATTACTAGATGATTTTGTCTATTACG 2040
Query 1697 AAAGCCGACAGAGAGTCATGCAGGATGAGAGAACCAGGCTGCCGTACAGGACCTTTCTTA 1756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2041 AAAGCCGACAGAGAGTCATGCAGGATGAGAGAACCAGGCTGCCGTACAGGACCTTTCTTA 2100
Query 1757 ACGATTTACCATTACCCAGGCCAGATCTCTCTGATAGAAACAAGAAAACCCCCTTGGAAT 1816
| ||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||
Sbjct 2101 GCCCTTTACCATTACCCAGACCAGATCTCTCTGATAGAAACAATAAAATCCCCTTGGAAG 2160
Query 1817 CCTTCAAGAAACCTTCAGTAATCTCTGCAAAAACCGAGGAGCTTCCTTCAAAGTCAGAGG 1876
||||||||| ||||||||| | ||||||||||||| ||||| ||| |||||||||||| |
Sbjct 2161 CCTTCAAGAGACCTTCAGTGAGCTCTGCAAAAACCAAGGAGGTTCGTTCAAAGTCAGATG 2220
Query 1877 GGAATGAGGAGACCACTGTAAAAGAAGGT-AATGAAGAAGATACTTCTTCCACTCAGAAG 1935
||||||||||||||||||| || |||| | ||||||||| |||||||||||| |||||||
Sbjct 2221 GGAATGAGGAGACCACTGTTAAGGAAG-TCAATGAAGAAAATACTTCTTCCATTCAGAAG 2279
Query 1936 AAGATCAGCTCACTCACCATTGACCCGAGTGGTACAGACTCTAACCCGACTACTGTTTCT 1995
||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 2280 AAGATCAGCTCTCTCACCATTGACCCGAGTGGTACAGACTCTGACCCGACCACTGTTTCT 2339
Query 1996 CACCTGAACCAGAAGAGTCAAGCCAAGTCTAAACCGAACTCCTCTGGCTCTCTCAAGAAG 2055
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 2340 CACCTGAACCAGAAGAGTCAAGCCAAGTCTAAACCGACCTCCTCAGGCTCTCTCAAGAAG 2399
Query 2056 ACAGACCCCTCTGAAGTGGTTGATGCTTCTCTCTCGGATAAAAATGAC--T--C----T- 2106
|||||| |||| ||||||||||||||||||||||| ||| |||||||| | | |
Sbjct 2400 ACAGACTCCTCGGAAGTGGTTGATGCTTCTCTCTCTGATGAAAATGACACTGTCAAAGTA 2459
Query 2107 ---T--T--C--A-AA--GTTACCGGGTCTCCTGCAATCTTAACAGTCGGTACTATTCCT 2154
| | | | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2460 GGATCATTGCCTATAAAAGTTACCGGGTCTCCTGCAATCTTAACAGTCGGTACTATTCCT 2519
Query 2155 CTGGACCCCAAGTCACTTCAGAAGTAAACCACCCC 2189
|||||||||||||||||||||||||||| ||||||
Sbjct 2520 CTGGACCCCAAGTCACTTCAGAAGTAAAACACCCC 2554
Score = 228 bits (123), Expect = 2e-58
Identities = 180/204 (88%), Gaps = 17/204 (8%)
Strand=Plus/Plus
Query 2231 CTCTCTAAAGTCTAAAGTTGATCCTGCTTCATCATACAAGCCAATGTGGTATGAAGAGAG 2290
||||| ||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||
Sbjct 2554 CTCTCAAAAGTCTAAAGTTAATCCTGCGTCATCATACAAGCCAATGTGGTATGCAGAGAG 2613
Query 2291 GGTTCTGTTTGTATAGATGAGTCTTGACT--TGA--T-A-A-TCCGTGATTCGATCAAAC 2343
||||||||||||||||||||||||||||| ||| | | | ||||||||| ||||||||
Sbjct 2614 GGTTCTGTTTGTATAGATGAGTCTTGACTGGTGACCTGATAATCCGTGATTTGATCAAAC 2673
Query 2344 GCCAAAAAGAGAATTGTTGAGGGTTGAGGTTTGCGGTTAGTGGTTGCGTTTCGGTTATTT 2403
||||||||||||||||||| || || | |||||||||||||| |||||||||||||
Sbjct 2674 GCCAAAAAGAGAATTGTTGCGG-TT----T--GCGGTTAGTGGTTGTGTTTCGGTTATTT 2726
Query 2404 TGGATGT--CCTTGAGAGAGCTGT 2425
||||||| ||| |||||||||||
Sbjct 2727 TGGATGTGGCCT-GAGAGAGCTGT 2749
Score = 165 bits (89), Expect = 2e-39
Identities = 152/179 (85%), Gaps = 18/179 (10%)
Strand=Plus/Plus
Query 33 ctctctctctctctTCAACCCCTCTTCTCAATCTAGGGTTAGGGTTTCGATTCTGCTAGA 92
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 CTCTCTCTCTCTCTCCAACCCCTCTTCTCAATCTAGGGTTAGGGTTTCGATTCTGC-AGA 59
Query 93 GGttttttttCTCCCAACTTATACTTCTAAGCCCTCTCGTCATAAGCCTTGTTGACTCTT 152
|| || | || | ||| |||||||| |||||||||||||| |||||
Sbjct 60 GG-----GTT-T------TT-T--TTC--AGCCCTCTTTTCATAAGCCTTGTTCTCTCTT 102
Query 153 CTTCTTAATTTGAAGAACTTCGTAGGCTAAGCATGTCGTGATTATCCCAAATTTCTGGT 211
|||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 103 CTTCTTAATTCGAAGAACTTCATAGTCTAAGCATGTCGTGATTATCCCAAATTTCTGGT 161
Score = 80.5 bits (43), Expect = 6e-14
Identities = 54/59 (92%), Gaps = 2/59 (3%)
Strand=Plus/Plus
Query 2515 CTGTCTGTG-TTCTGTTTGGTTGTTTGTTCCTCCCAACTCAAAGAGTTTCAAATTGAAT 2572
|||| |||| || | |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2746 CTGT-TGTGTTTTTTTTTGTTTGTTTGTTCCTCCCAACTCAAAGAGTTTCAAATTGAAT 2803
> Ahg904695 jgi|Araly1|904695|Al_scaffold_0003_1823
Length=1848
Score = 754 bits (408), Expect = 0.0
Identities = 596/689 (87%), Gaps = 4/689 (1%)
Strand=Plus/Plus
Query 1067 GTGAACAAAATCGAGGTCGAAGATCGAG-AGCATTGGGAAATCAACTTATTGTTAAAGCT 1125
||||||||||||||||| |||| |||| || || |||||||||| ||||| ||||||
Sbjct 728 GTGAACAAAATCGAGGTATAAGAACGAGAAG-ATCAAGAAATCAACTAATTGTCAAAGCT 786
Query 1126 TATACAACAAAAGCTGGAAATGCTGATGCCGAGGGAAATATTGTGATCAA-TCCTTCTCA 1184
|||||||| ||||||||||| | |||| | || ||||| |||||||| || |||| |||
Sbjct 787 TATACAACCAAAGCTGGAAACGTTGATTCGGAAGGAAACATTGTGAT-AAGTCCTGATCA 845
Query 1185 GTATAATAAAGAGGATCTCCGAATCGATTACAGCAATGCCAAGTTTTTTGTGATTAAATC 1244
||||||||||| ||| || | | ||||||||| |||||||||||||||||||||||||
Sbjct 846 ATATAATAAAGAAGATTTCAGTCTTGATTACAGCGATGCCAAGTTTTTTGTGATTAAATC 905
Query 1245 GTATAGTGAAGATGACGTTCACAAGAGCATCAAATACAATGTTTGGTCATCAACTTTGCA 1304
||||||||||||||| ||||||||||||||||| || ||| ||||||||||| |||||
Sbjct 906 GTATAGTGAAGATGATGTTCACAAGAGCATCAAGTATGGTGTCTGGTCATCAACATTGCA 965
Query 1305 TGGGAACAAGAAATTGCAGAGTGCGTATGAAGATGCTCAGAGAATAGCCACCGAGAAGTC 1364
||||||||||||||||||| ||| ||||||||| ||||||||||| |||| ||||||||
Sbjct 966 TGGGAACAAGAAATTGCAGGGTGTATATGAAGATACTCAGAGAATACCCACTGAGAAGTC 1025
Query 1365 TTGTGAATGCCCGATATTCTTGTTCTTTTCTGTTAATGCCAGTGGTTTGTTCTGTGGCAT 1424
| ||||||| || || ||||| ||||||||||| |||||||||||| ||||||||||| |
Sbjct 1026 TCGTGAATGTCCTATTTTCTTATTCTTTTCTGTCAATGCCAGTGGTCTGTTCTGTGGCGT 1085
Query 1425 GGCTGAGATGACTGGTCCAGTTTCTTTTGATAAAGACATGGATTTTTGGCAGCAAGACAA 1484
|||||||||||| ||||||||||| || || ||||||||||||||||||||||||||
Sbjct 1086 GGCTGAGATGACCGGTCCAGTTTCCTTCGACCGCGACATGGATTTTTGGCAGCAAGACAA 1145
Query 1485 ATGGAGTGGAAGCTTTCCCGTCAAATGGCACATCATAAAAGATGTTCCCAATAGCTATTT 1544
|||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 1146 ATGGAGTGGAAGCTTTCCTGTCAAGTGGCACATCATTAAAGATGTTCCTAATAGCTATTT 1205
Query 1545 CAGGCACATCATACTACAGAACAATGAGAATAAGCCGGTCACCAACAGTCGAGACACACA 1604
||||||||| || |||| || |||||||||||||| || |||||||| |||||||||||
Sbjct 1206 CAGGCACATTATTTTACATAATAATGAGAATAAGCCAGTGACCAACAGCCGAGACACACA 1265
Query 1605 AGAGATAATGCTGAAACAAGGTCTGGAAGTGCTAAAAATATTTAAAGATCATATGGAAAG 1664
||||||||| ||||||||||| || || ||||||||| |||| ||| ||||| |||||
Sbjct 1266 AGAGATAATACTGAAACAAGGACTCGAGGTGCTAAAACTATTCAAAAATCATGCGGAAAA 1325
Query 1665 GACTTCATTGCTAGATGATTTTGTGTACTACGAAAGCCGACAGAGAGTCATGCAGGATGA 1724
||||||| | ||||||||||| |||||||||||| ||| |||||| |||||||||| ||
Sbjct 1326 GACTTCACTATTAGATGATTTTATGTACTACGAAAACCGCCAGAGACTCATGCAGGAAGA 1385
Query 1725 GAGAACCAGGCTGCCGTACAGGACCTTTC 1753
|||| | || || || | |||||||||||
Sbjct 1386 GAGAGCTAGACTTCCATTCAGGACCTTTC 1414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97358666220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5