BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48130.1
Length=986
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473951 jgi|Araly1|473951|fgenesh2_kg.1__3905__AT1G48130.1 1088 0.0
> Ahg473951 jgi|Araly1|473951|fgenesh2_kg.1__3905__AT1G48130.1
Length=834
Score = 1088 bits (589), Expect = 0.0
Identities = 730/795 (92%), Gaps = 22/795 (3%)
Strand=Plus/Plus
Query 100 AAAGGTAAAATGCCAGGGATCACACTAGGAGACACGGTGCCGAACCTAGAAGTGGAGACG 159
|||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 56 AAAGATAAGATGCCAGGGATCACACTAGGAGACACGGTACCGAACCTAGAAGTGGAGACG 115
Query 160 ACACATGACAAGTTCAAACTTCATGACTACTTCGCCAATTCTTGGACCGTCCTCTTCTCT 219
||| ||| || |||||| |||||||||||||| ||| |||||||||||||||||||||||
Sbjct 116 ACAAATGGCACGTTCAAGCTTCATGACTACTTTGCCGATTCTTGGACCGTCCTCTTCTCT 175
Query 220 CATCCCGGGGATTTCACACCCGTGTGCACCACGGAGCTTGGTGCGATGGCCAAATACGCT 279
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 176 CATCCCGGGGATTTCACACCGGTATGCACCACGGAGCTTGGTGCGATGGCGAAATACGCT 235
Query 280 CATGAGTTCGATAAGAGAGGCGTGAAGCTCCTT-GGTCTGTCTTGTGACGATGTACAGTC 338
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 236 CATGAGTTCGATAAGAGAGGCGTGAAGCTCCTTGGGT-TGTCTTGTGACGATGTACAGTC 294
Query 339 ACACAAAGACTGGATCAAAGATATTGAAGCCTTTAATCACGGAAGCAAGGTGAATTACCC 398
||||||||||||||||||||| || ||||| |||| ||||||||||||||||| |||||
Sbjct 295 ACACAAAGACTGGATCAAAGACATCGAAGCTTTTACGCACGGAAGCAAGGTGAAGTACCC 354
Query 399 GATAATCGCTGACCCGAACAAAGAGATCATTCCTCAGCTTAACATGATTGATCCAATTGA 458
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 355 TATAATCGCTGACCCGAACAAAGAGATCATTCCTCAGCTTAACATGATTGATCCAATCGA 414
Query 459 GAACGGACCGTCTCGTGCCCTTCATATTGTTGGTCCTGACAGTAAGATAAAATTGAGCTT 518
||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 415 GAATGGACCGTCTCGTGCCCTTCATATTGTTGGTCCTGATAGCAAGATAAAGTTGAGCTT 474
Query 519 CTTGTATCCGTCGACCACGGGACGTAACATGGACGAAGTATTGAGGGCTTTAGACTCGTT 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 CTTGTATCCGTCGACCACGGGACGTAACATGGACGAAGTATTGAGGGCTTTAGACTCGTT 534
Query 579 GTTGATGGCGTCCAAGCACAATAACAAGATCGCCACTCCGGTTAACTGGAAGCCAGATCA 638
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 535 GTTGATGGCGTCCAAGCACAATAACAAGATCGCCACTCCGGTTAACTGGAAACCGGATGA 594
Query 639 ACCGGTTGTGATTTCGCCTGCTGTGTCGGACGAGGAAGCCAAAAAGATGTTCCCACAGGG 698
||||||||||||||||||||| ||||| ||||| ||||||||||||||||| || |||||
Sbjct 595 ACCGGTTGTGATTTCGCCTGCCGTGTCTGACGAAGAAGCCAAAAAGATGTTTCCTCAGGG 654
Query 699 TTTCAAGACCGCCGATCTTCCGTCAAAGAAAGGCTATCTGCGTCACACAGAGGTCTCTTG 758
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 655 TTTCAAGACCGCCGATCTTCCGTCAAAGAAAGGCTATCTGCGTCACACTCAGGTCTCTTG 714
Query 759 AAAAGATAATAACAAAAGCCTACTATATAACGTACATGCAAGTATTGTATGATATTAATG 818
||| ||||| |||||||||||| |||| |||||| || | |||| |||||||||||| |
Sbjct 715 AAA-GATAAAAACAAAAGCCTAATATAAAACGTA-ATACGAGTACTGTATGATATTAC-G 771
Query 819 TTTTTACGTACGTGTAAACAAAAATAATTACGTTT-GTAACGTATGGTGAT-GATG-TG- 874
| || | ||| ||| | ||||||||||| |||||||||| |||| |||| ||
Sbjct 772 TGTT---G-ACG---AAA-A----TAATTACGTTTTGTAACGTATGATGATTGATGATGT 819
Query 875 GT-GCACTAGGTGTA 888
|| ||||||||||||
Sbjct 820 GTTGCACTAGGTGTA 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36636123237
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5