BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48140.1
Length=689
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314249 jgi|Araly1|314249|fgenesh1_pm.C_scaffold_1003029 416 1e-115
> Ahg314249 jgi|Araly1|314249|fgenesh1_pm.C_scaffold_1003029
Length=270
Score = 416 bits (225), Expect = 1e-115
Identities = 255/270 (94%), Gaps = 0/270 (0%)
Strand=Plus/Plus
Query 123 ATGAAGCATATAGTAAAGATCTTGAGCCTGTTGGTGGCTATCTCTGCCTTCTGGATTGGT 182
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1 ATGAAGCATATAGTAAAGATCTTGAGCTTGTTGGTGGCAATCTCTGCCTTCTGGATTGGT 60
Query 183 CTTTTGCAGGCTGCAATTATTCCTCGAAGCCATACATGGTTGCTACCGATCTACTTTGTT 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTTTGCAGGCTGCAATTATTCCTCGAAGCCATACATGGTTGCTACCGATCTACTTTGTA 120
Query 243 GTATCCCTCGGATGCTATGGCCTATTAATGGTTGGAGTCGGGCTCATGCAGTTTCCTACT 302
|||||||| ||||||||||| ||||||||||||||| |||| || ||||| ||||||||
Sbjct 121 GTATCCCTTGGATGCTATGGTCTATTAATGGTTGGAATCGGACTAATGCAATTTCCTACC 180
Query 303 TGCCCCCAAGAAGCAGTTCTGCTGCAGAAGGATATTGCAGAGGCTAAGGACTTCTTCAAG 362
|| |||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||
Sbjct 181 TGTCCCCAAGAAGCAGTTCTGTTGCAAAAGGATATTGCAGAGGCCAAGGACTTCTTCAAG 240
Query 363 CACAAAGGGGTAGATGTTGGATCGAATTGA 392
|||| |||||||||||||||||||||||||
Sbjct 241 CACAGAGGGGTAGATGTTGGATCGAATTGA 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25313616888
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5