BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48150.1
Length=972
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936960 jgi|Araly1|936960|scaffold_501151.1 750 0.0
Ahg936984 jgi|Araly1|936984|scaffold_501175.1 405 3e-112
> Ahg936960 jgi|Araly1|936960|scaffold_501151.1
Length=870
Score = 750 bits (406), Expect = 0.0
Identities = 735/880 (84%), Gaps = 77/880 (9%)
Strand=Plus/Plus
Query 144 TCTTTGCCTTCTCTCCGGAGCCAACATAGCCGTTTTTGTAACTTCTCCTGACGAGAACTC 203
||| || |||||||| ||||||||||| ||||| || ||||| ||||| |||||||||||
Sbjct 1 TCTCTGTCTTCTCTCTGGAGCCAACATGGCCGTCTTCGTAACCTCTCCGGACGAGAACTC 60
Query 204 CGATGTCGTTTATTCATTCTCGGGCTACTCTCATGCCTCTGAAATTGTTGACTGTTACCT 263
||| || ||||| || ||||| |||||||||| |||||||||||||||||| ||||||||
Sbjct 61 CGACGTTGTTTACTCCTTCTCCGGCTACTCTCCTGCCTCTGAAATTGTTGATTGTTACCT 120
Query 264 CAACAACAAGTCTCCTCCCAAGACTACTATTAACCCTGAAT-C-AGCCA-AGTTTTGGTG 320
|||| |||||||||||||||| || ||||||| || ||| | || | |||||||||
Sbjct 121 CAACGGCAAGTCTCCTCCCAAG-CT--TATTAACTCTCAATCCAAGTTAGGGTTTTGGTG 177
Query 321 GGAAGAGCCC-GATCTTTACCGTGATTGTGACGATCTGTCTGAGTTAAGA-ATCATCGAA 378
|||||| ||| ||||| || ||| ||||||||||||| |||||||||| | | |||||||
Sbjct 178 GGAAGA-CCCTGATCTATATCGTTATTGTGACGATCTCTCTGAGTTAA-ATACCATCGAA 235
Query 379 GATCGTTTGATGAGAACGAAGAAGCATCTCATGGATTATCTTGAGAAGAAAGAAAAATCA 438
|||||| |||||||||||| ||||||||| ||||||| ||||||||||||||||||||||
Sbjct 236 GATCGTATGATGAGAACGAGGAAGCATCTGATGGATTGTCTTGAGAAGAAAGAAAAATCA 295
Query 439 CACTCTGTTTCTAAATCCGATCAAAACCCTAACA---AC--G--A--C----A--GTGGG 483
|| | ||||||||| ||||||||||||||||||| || | | | | |||||
Sbjct 296 CAATTTGTTTCTAATTCCGATCAAAACCCTAACACCGACGAGATATTCAATAATGGTGGG 355
Query 484 TCTTCTTCTTCGTCTTCTCAAATTGCTTCTGATTTTGGTCAAAACCCTAGTACCT-TGTC 542
||||||||||| ||||||||||||||||||||||| || |||||||||||||||| | ||
Sbjct 356 TCTTCTTCTTCTTCTTCTCAAATTGCTTCTGATTTAGGCCAAAACCCTAGTACCTCT-TC 414
Query 543 TCCGTCTTCCTTAAAAATTGTTTCTTTTGATCAGAACTCTT--A-CT-CC-T--C-A--- 591
||||||||||| | | ||||||||||||||||||||||||| | || || | | |
Sbjct 415 TCCGTCTTCCTCACAGATTGTTTCTTTTGATCAGAACTCTTACACCTCCCTTGGCAAGTT 474
Query 592 CT-T---GAGCCTTCGTCACAAGTTACTACTTGTTTTGATCAAAACCCTGTTTTCTCTGT 647
| | |||||||||||||||| | |||||||| ||||||||||||| ||||||||
Sbjct 475 ATGTGGCGAGCCTTCGTCACAAG-T--TACTTGTTATGATCAAAACCCTAACTTCTCTGT 531
Query 648 TGGCAGCGAGTCA-TCATCTGATCAATCTCGTTACTTGGTGAATGAAGATTCTGGATTTG 706
| | |||||| | |||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 532 T-G--GCGAGT-ACTCATATGATCAATCTCGTTACTTGGTGAATGAAGATCCTGGATTTG 587
Query 707 TTGACGGCCTCTTATGTGAAACAGAGGAAGAGAATAACGGAATGCGTCTTCCCCAAGAAA 766
||||| | |||||||||||||||||| ||||||||||||||| ||||||| |||||||
Sbjct 588 TTGACTG---CTTATGTGAAACAGAGGAGGAGAATAACGGAATGAGTCTTCCTCAAGAAA 644
Query 767 CACAAACACAACCGATGTTCACAGAGGAGGATCAGAGCTTTTGGGAAAACCTA-----G- 820
|||| |||| | || ||||||| ||||||||||||||||||||||| ||| |
Sbjct 645 CACAGACACCATCGTTGTTCAC---TGAGGATCAGAGCTTTTGGGAAAATCTATTTAAGG 701
Query 821 ATGTCGACGACGTGTTTGGTCTTTTTAAGGACGACAACAATCTTGAGGTTCCTCTTCAAG 880
||| ||| |||||||||||||| |||| ||||||| |||||||||||||||||||
Sbjct 702 ATGAAGACAACGTGTTTGGTCTTCTTAA---CGACAAC---CTTGAGGTTCCTCTTCAAG 755
Query 881 ATCATTCCTCAACCAACGAAGACGA---CGAGTT-ATTGATCGACATAAGTGAATACTTA 936
|||||||||||||||||||||| || |||||| || |||||| || ||||||| ||||
Sbjct 756 ATCATTCCTCAACCAACGAAGAAGAAGACGAGTTTAT-GATCGATATCAGTGAATTCTTA 814
Query 937 AGCGAAGAAGCA-A-TG-GAATG-CCCATGTTTTAGTTAG 972
|||||||||| | | | ||||| ||| ||||||||||||
Sbjct 815 AGCGAAGAAGAAGAATTCGAATGGCCCCTGTTTTAGTTAG 854
> Ahg936984 jgi|Araly1|936984|scaffold_501175.1
Length=1006
Score = 405 bits (219), Expect = 3e-112
Identities = 402/482 (83%), Gaps = 46/482 (10%)
Strand=Plus/Plus
Query 519 TGGTCAAAACCCTAGTACCT-TGTCTCCGTCTTCCTTAAAAATTGTTTCTTTTGATCAGA 577
||||||||||||||| |||| | ||||||| ||||| | | |||||||||||||||||||
Sbjct 527 TGGTCAAAACCCTAGCACCTCT-TCTCCGTATTCCTCACACATTGTTTCTTTTGATCAGA 585
Query 578 ACTCTTACTCCT--C---AC------T-T---GAGCCTTCGTCACAAGTTACTACTTGTT 622
|||||||||||| | || | | |||||||||||||||| | ||||||||
Sbjct 586 ACTCTTACTCCTCCCTTGACAAGTTATGTGGCGAGCCTTCGTCACAAG-T--TACTTGTT 642
Query 623 TTGATCAAAACCCTGTTTTCTCTGTTGGCAGCGAGTCATCATCTGATCAATCTCGTTACT 682
||||||||||||| | ||||||||| | ||||||||| || |||||||||||||||||
Sbjct 643 ATGATCAAAACCCTATCTTCTCTGTT-G--GCGAGTCATTATGTGATCAATCTCGTTACT 699
Query 683 TGGTGAATGAAGATTCTGGATTTGTTGACGGCCTCTTATGTGAAACAGAGGAAGAGAATA 742
|||||||||||||| ||||||||||| || | |||||||||||||| ||| |||||||
Sbjct 700 TGGTGAATGAAGATCCTGGATTTGTTAACTG---CTTATGTGAAACAGGGGAGGAGAATA 756
Query 743 ACGGAATGCGTCTTCCCCAAGAAACACAAACACAACCGATGTTCACAGAGGAGGATCAGA 802
|||||||| || | |||||||||||||||||||| ||||| ||| || | |||||||
Sbjct 757 ACGGAATGAGTGTAGCCCAAGAAACACAAACACAATCGATGCTCATTGA--A-GATCAGA 813
Query 803 GCTTTTGGGAAAACCTA------GATGTCGACGACGTGTTTGGTCTTTTTAAGGACGACA 856
||||||||||||||||| |||| |||| |||||||||||||| |||| |||||
Sbjct 814 GCTTTTGGGAAAACCTACTTAAAGATGACGACAACGTGTTTGGTCTTCTTAA---CGACA 870
Query 857 ACAATCTTGAGGTTCCTCTTCAAGATC-ATTCCTCAACCAACGAAGACGACGAGTT-ATT 914
|||| |||||||||||||||||||||| || |||||||||||||||| |||||||| ||
Sbjct 871 ACAACCTTGAGGTTCCTCTTCAAGATCGAT-CCTCAACCAACGAAGAAGACGAGTTTAT- 928
Query 915 GATCGACATAAGTGAATACTTAAGCGAAGAAGCA-A-TG-GAATG-CCCATGTTTTAGTT 970
|||||| || ||||||| |||||||||||||| | | | ||||| ||| ||||||||||
Sbjct 929 GATCGATATCAGTGAATTCTTAAGCGAAGAAGAAGAATTCGAATGGCCCCTGTTTTAGTT 988
Query 971 AG 972
||
Sbjct 989 AG 990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36102402399
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5