BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48160.1
Length=1042
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913843 jgi|Araly1|913843|Al_scaffold_0001_4097 732 0.0
Ahg357880 jgi|Araly1|357880|fgenesh1_pg.C_scaffold_8001667 732 0.0
Ahg913844 jgi|Araly1|913844|Al_scaffold_0001_4098 239 3e-62
> Ahg913843 jgi|Araly1|913843|Al_scaffold_0001_4097
Length=438
Score = 732 bits (396), Expect = 0.0
Identities = 425/439 (97%), Gaps = 2/439 (0%)
Strand=Plus/Plus
Query 371 ATGGATAGTGGAA-CGATAAACATTAAGAAATGGGTAGTGATATATCCAGTCTATATTAA 429
||||||||||||| || | ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGGATAGTGGAACCG-TCAACATCAAGAAATGGGTAGTGATATATCCAGTTTATATTAA 59
Query 430 CTCAAAGAAAACTGTAGCTGAGGGAAGAAGAATCAGTGTGAGTAAGTCATGTGAGAACCC 489
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 60 CTCAAAGAAAACTGTAGCTGAGGGAAGAAGAATCAGTGTGAGTAAATCATGTGAGAACCC 119
Query 490 GAATTGCATCGAGATTAGTGATTGTTGCAAGCATTTGAAACTCCCTAGTGCCGTCGAGAT 549
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GAATTGCATTGAGATTAGTGATTGTTGCAAGCATTTGAAACTCCCTAGTGCCGTCGAGAT 179
Query 550 TGACAAAGCATACCCGCGAGATTTCATGCAAGTAGGGAGAGTGAGGGTGCAATTGAAAAG 609
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TGACAAAGCATACCCGCGCGATTTCATGCAAGTAGGGAGAGTGAGGGTGCAATTGAAAAG 239
Query 610 AGAAGATGGTACTTTACTCAATCCAGCCATTACTTCAAGGAAGCATCTGATGCAGAAAAT 669
|||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 240 GGAAGATGGGACTTTACTCAATCCATCCATTACTTCAAGGAAGCATCTGCTGCAGAAAAT 299
Query 670 TGCAGAGTTGGTACCAAGACATCCAGAGAGAGTAAAGAAGCAGGAAGCTCAGAAAGCGAA 729
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 300 TGCAGAGTTGGTACCAAGACATCCAGAGAGAGTGAAGAAGCAGGAAGCTCAGAAAGCGAA 359
Query 730 GAAGCAGGAACCTCAGGCCACAACTTCAACCTCTGGAACTTCTTCAAAGTCAGGCAAAGG 789
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAAGCAGGAACCTCAGACCACAACTTCAACCTCTGGAACTTCTTCAAAGTCAGGCAAAGG 419
Query 790 TGGCAAGAAGAAGAGATAA 808
|||||||||||||||||||
Sbjct 420 TGGCAAGAAGAAGAGATAA 438
> Ahg357880 jgi|Araly1|357880|fgenesh1_pg.C_scaffold_8001667
Length=438
Score = 732 bits (396), Expect = 0.0
Identities = 424/438 (97%), Gaps = 0/438 (0%)
Strand=Plus/Plus
Query 371 ATGGATAGTGGAACGATAAACATTAAGAAATGGGTAGTGATATATCCAGTCTATATTAAC 430
||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATAGTGGAACGGTCAACATCAAGAAATGGGTAGTGATATATCCAGTCTATATTAAC 60
Query 431 TCAAAGAAAACTGTAGCTGAGGGAAGAAGAATCAGTGTGAGTAAGTCATGTGAGAACCCG 490
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 61 TCAAAGAAAACTGTAGCTGAGGGAAGAAGAATCAGTGTGAGTAAATCATGTGAGAATCCG 120
Query 491 AATTGCATCGAGATTAGTGATTGTTGCAAGCATTTGAAACTCCCTAGTGCCGTCGAGATT 550
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AATTGCATTGAGATCAGTGATTGTTGCAAGCATTTGAAACTCCCTAGTGCCGTCGAGATT 180
Query 551 GACAAAGCATACCCGCGAGATTTCATGCAAGTAGGGAGAGTGAGGGTGCAATTGAAAAGA 610
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GACAAAGCATACCCGCGCGATTTCATGCAAGTAGGGAGAGTGAGGGTGCAATTGAAAAGG 240
Query 611 GAAGATGGTACTTTACTCAATCCAGCCATTACTTCAAGGAAGCATCTGATGCAGAAAATT 670
|||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 241 GAAGATGGGACTTTACTCAATCCAGCTATTACTTCAAGGAAGCATCTGCTGCAGAAAATT 300
Query 671 GCAGAGTTGGTACCAAGACATCCAGAGAGAGTAAAGAAGCAGGAAGCTCAGAAAGCGAAG 730
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 GCAGAGTTGGTACCAAGACATCCAGAGAGAGTGAAGAAGCAGGAAGCTCAGAAAGCGAAG 360
Query 731 AAGCAGGAACCTCAGGCCACAACTTCAACCTCTGGAACTTCTTCAAAGTCAGGCAAAGGT 790
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 361 AAGCAGGAACCTCAGGCCACAACTTCATCCTCTGGAACTTCTTCAAAGTCAGGCAAAGGT 420
Query 791 GGCAAGAAGAAGAGATAA 808
||||||||||||||||||
Sbjct 421 GGCAAGAAGAAGAGATAA 438
> Ahg913844 jgi|Araly1|913844|Al_scaffold_0001_4098
Length=456
Score = 239 bits (129), Expect = 3e-62
Identities = 160/174 (92%), Gaps = 6/174 (3%)
Strand=Plus/Minus
Query 42 CTGTTTCGCGAGACGGATGATCTGGAACTGGATAGTAACATCATCGAAAACTTCAGTGAA 101
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 168 CTGTTTCGCGAGACGGATGATCTGGAACTGGATAGTGACATCATCGAAAACTTCAGTGAA 109
Query 102 GCACGAAACTTTTACGCCGTTTCCGTCTCTTTCTACGTCGTCGGATTCTCCGATTTGGTC 161
|||||| |||||||| |||| ||||||| |||||| |||| ||||||||||||||
Sbjct 108 GCACGAGACTTTTACACCGTCTCCGTCT------ACGTCGCCGGAATCTCCGATTTGGTC 55
Query 162 GGCGATGTTCACCTGAGCAACGGATCGAAGAACTTGGTCGTATTCAGTCTCCAT 215
|||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 54 GGCGATGTTCACCTGAGCAACGGAGCTAAGAACTTGGTCGTATTCAGTCTCCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38771006589
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5