BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G48170.1

Length=944
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg913844 jgi|Araly1|913844|Al_scaffold_0001_4098                    726    0.0  


> Ahg913844 jgi|Araly1|913844|Al_scaffold_0001_4098
Length=456

 Score =  726 bits (393),  Expect = 0.0
 Identities = 440/462 (95%), Gaps = 6/462 (1%)
 Strand=Plus/Plus

Query  25   ATGGAGACTGAATACGACCAAGTTCTTCGATCCGTTGCTCAGGTGAACATCGCCGACCAA  84
            ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct  1    ATGGAGACTGAATACGACCAAGTTCTTAGCTCCGTTGCTCAGGTGAACATCGCCGACCAA  60

Query  85   ATCGGAGAATCCGACGACGTAGAAAGAGACGGAAACGGCGTAAAAGTTTCGTGCTTCACT  144
            |||||||| |||| ||||||      ||||||| |||| |||||||| ||||||||||||
Sbjct  61   ATCGGAGATTCCGGCGACGT------AGACGGAGACGGTGTAAAAGTCTCGTGCTTCACT  114

Query  145  GAAGTTTTCGATGATGTTACTATCCAGTTCCAGATCATCCGTCTCGCGAAACAGATTTAC  204
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  115  GAAGTTTTCGATGATGTCACTATCCAGTTCCAGATCATCCGTCTCGCGAAACAGATTTAC  174

Query  205  GTATGGGTCGGTTGCAATTCCGCCAAATTTGGGAGTTTGTACGCAGCCGCTTCAACACGA  264
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  175  GTATGGGTCGGTTGCAATTCCGCTAAATTTGGGAGTTTGTACGCAGCCGCTTCAACACGA  234

Query  265  CCGAGCAATACAGTGAGTGTTACATCGGTACTTGGTGGAACATCTGATAACACTGGATCT  324
            ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  235  CCGAGTAATACAGTGAGTGTTACTTCAGTACTTGGTGGAACATCTGATAACACTGGATCT  294

Query  325  GGCATTGCGCGTAGATTAGTGTTGAAGACTGGTCTCAATATAATACTGGCTTGCAACATC  384
            |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  295  GGCATTGCTCGTAGATTAGTGTTGAAGACTGGTCTCAATATAATCCTGGCTTGCAACATC  354

Query  385  CCTAAAAACAATCCCTTGCTTGAGGCAAAAGCTGAGAAAGTGTTGATTAGAAAGCTGATT  444
            |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  355  CCTAAAAACAATCCATTGCTTGAGGCAAAAGCTGAGAAAGTGTTGATCAGAAAGCTGATT  414

Query  445  GATCTTGGTTACACAATGTCAAAACCTGTAAGAGCAACATAA  486
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct  415  GATCTTGGTTACACAATGTCAAAACCTGTAAGAGCAACATAA  456



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35034960723


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5