BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G48175.1 Length=890 Score E Sequences producing significant alignments: (Bits) Value Ahg314252 jgi|Araly1|314252|fgenesh1_pm.C_scaffold_1003032 798 0.0 > Ahg314252 jgi|Araly1|314252|fgenesh1_pm.C_scaffold_1003032 Length=579 Score = 798 bits (432), Expect = 0.0 Identities = 525/566 (93%), Gaps = 21/566 (4%) Strand=Plus/Plus Query 81 AAGAGGACCATTGTGAGGATTCTCATAATTATATGGGTTTTGCTCTGCATCAGGCTAAAC 140 |||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||| Sbjct 14 AAGAGGACCATTGTGAGGATTCTCTTACTTATATGGGTTTTGCTCTGCACCAGGCTAAAC 73 Query 141 TTGCTCTGGAGGCTCTTGAAGTTCCCGTGGGATGTGTTTTTCTTGAGGACGGTAAGGTCA 200 ||||||||||||| ||||||||||| || ||||||||| |||||||||| |||||||||| Sbjct 74 TTGCTCTGGAGGCACTTGAAGTTCCTGTTGGATGTGTTCTTCTTGAGGATGGTAAGGTCA 133 Query 201 TTGCTTCAGGGCGAAACCGAACAAATGAGACACGCAATGCCACAAGACATGCAGAGATGG 260 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 134 TTGCTTCAGGGCGAAACCGAACAAATGAGACACGCAATGCCACAAGACATGCTGAGATGG 193 Query 261 AAGCAATTGATCAGCTTGTCGGACAGTGGCAGAAAGATGGACTCTCACCTTCACAAGTCG 320 ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 194 AAGCAATTGATCAACTTGTCGGACAGTGGCAGGAAGATGGACTCTCACCTTCACAAGTCG 253 Query 321 CTGAGAAATTCTCGAAATGTGTTCTTTATGTAACATGTGAACCTTGCATAATGTGTGCAT 380 ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 254 CTGAGAAATTCTCGAAATGCATTCTTTACGTAACATGTGAACCTTGCATAATGTGTGCAT 313 Query 381 CGGCCTTATCGTTTCTCGGTATCAAGGAAGTGTATTATGGATGTCCAAATGATAAATTTG 440 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 314 CGGCCTTATCGTTTCTCGGTATAAAGGAAGTGTATTATGGATGTCCAAATGATAAATTTG 373 Query 441 GGGGATGTGGTTCCATTTTGTCGCTTCACTT----AG------GT----AG-T------G 479 ||||||||||||||||||||||||||||||| || || || | | Sbjct 374 GGGGATGTGGTTCCATTTTGTCGCTTCACTTGGGCAGTTCTCAGTCGTCAGATATCATTG 433 Query 480 AGGAAGCTCAAAGAGGAAAAGGATACAAGTGCAGAGGAGGAATAATGGCAGAAGAAGCTG 539 |||||||||||||||||||||| || || ||||||||||||||||||||||||||||||| Sbjct 434 AGGAAGCTCAAAGAGGAAAAGGGTATAAATGCAGAGGAGGAATAATGGCAGAAGAAGCTG 493 Query 540 TCTCTCTTTTCAAATGTTTCTATGAGCAAGGCAATCCCAACGCTCCAAAGCCACACCGCC 599 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 494 TCTCTCTTTTCAAATGTTTCTATGAGCAAGGCAATCCCAACGCCCCAAAGCCACACCGCC 553 Query 600 CTGTTGTTCAAAGAGAGAGGACTTGA 625 |||| ||||||||||||||||||||| Sbjct 554 CTGTAGTTCAAAGAGAGAGGACTTGA 579 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32976323205 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5