BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G48175.1
Length=890
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314252 jgi|Araly1|314252|fgenesh1_pm.C_scaffold_1003032 798 0.0
> Ahg314252 jgi|Araly1|314252|fgenesh1_pm.C_scaffold_1003032
Length=579
Score = 798 bits (432), Expect = 0.0
Identities = 525/566 (93%), Gaps = 21/566 (4%)
Strand=Plus/Plus
Query 81 AAGAGGACCATTGTGAGGATTCTCATAATTATATGGGTTTTGCTCTGCATCAGGCTAAAC 140
|||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||
Sbjct 14 AAGAGGACCATTGTGAGGATTCTCTTACTTATATGGGTTTTGCTCTGCACCAGGCTAAAC 73
Query 141 TTGCTCTGGAGGCTCTTGAAGTTCCCGTGGGATGTGTTTTTCTTGAGGACGGTAAGGTCA 200
||||||||||||| ||||||||||| || ||||||||| |||||||||| ||||||||||
Sbjct 74 TTGCTCTGGAGGCACTTGAAGTTCCTGTTGGATGTGTTCTTCTTGAGGATGGTAAGGTCA 133
Query 201 TTGCTTCAGGGCGAAACCGAACAAATGAGACACGCAATGCCACAAGACATGCAGAGATGG 260
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 134 TTGCTTCAGGGCGAAACCGAACAAATGAGACACGCAATGCCACAAGACATGCTGAGATGG 193
Query 261 AAGCAATTGATCAGCTTGTCGGACAGTGGCAGAAAGATGGACTCTCACCTTCACAAGTCG 320
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 194 AAGCAATTGATCAACTTGTCGGACAGTGGCAGGAAGATGGACTCTCACCTTCACAAGTCG 253
Query 321 CTGAGAAATTCTCGAAATGTGTTCTTTATGTAACATGTGAACCTTGCATAATGTGTGCAT 380
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 254 CTGAGAAATTCTCGAAATGCATTCTTTACGTAACATGTGAACCTTGCATAATGTGTGCAT 313
Query 381 CGGCCTTATCGTTTCTCGGTATCAAGGAAGTGTATTATGGATGTCCAAATGATAAATTTG 440
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 314 CGGCCTTATCGTTTCTCGGTATAAAGGAAGTGTATTATGGATGTCCAAATGATAAATTTG 373
Query 441 GGGGATGTGGTTCCATTTTGTCGCTTCACTT----AG------GT----AG-T------G 479
||||||||||||||||||||||||||||||| || || || | |
Sbjct 374 GGGGATGTGGTTCCATTTTGTCGCTTCACTTGGGCAGTTCTCAGTCGTCAGATATCATTG 433
Query 480 AGGAAGCTCAAAGAGGAAAAGGATACAAGTGCAGAGGAGGAATAATGGCAGAAGAAGCTG 539
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 434 AGGAAGCTCAAAGAGGAAAAGGGTATAAATGCAGAGGAGGAATAATGGCAGAAGAAGCTG 493
Query 540 TCTCTCTTTTCAAATGTTTCTATGAGCAAGGCAATCCCAACGCTCCAAAGCCACACCGCC 599
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 494 TCTCTCTTTTCAAATGTTTCTATGAGCAAGGCAATCCCAACGCCCCAAAGCCACACCGCC 553
Query 600 CTGTTGTTCAAAGAGAGAGGACTTGA 625
|||| |||||||||||||||||||||
Sbjct 554 CTGTAGTTCAAAGAGAGAGGACTTGA 579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32976323205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5